Gene Ddes_0928 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDdes_0928 
Symbol 
ID7284605 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 
KingdomBacteria 
Replicon accessionNC_011883 
Strand+ 
Start bp1082536 
End bp1083447 
Gene Length912 bp 
Protein Length303 aa 
Translation table11 
GC content54% 
IMG OID643581725 
ProductCRISPR-associated protein Cas1 
Protein accessionYP_002479513 
Protein GI220904201 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1
[TIGR03638] CRISPR-associated endonuclease Cas1, ECOLI subtype 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGCCTGA TGTCTGAAAC CGTGCCTCTT AAAGAAAGAA ACTCCATGCT CTTTCTCAAG 
TATGGGCGCA TTGATGTTGA GGACGGGGCA TTTGTATTGG TAGACGCAAC GGGCGTGCGT 
ATGCAGATTC CCGTAGGTGG CGTTGCGTGC CTTTTTCTTG AACCGGGTAC GACGGTAACT 
CACGCTGCTC TGGCCTTGGC AGCAGATTGC GGCACCTTGA TGGTATGGGT CGGCGAGGGC 
GGCGTGCGTT TATACTCCGC CGGACAACCG GGCGGCGCAC GGGCTGACCG TTTGCTGTAT 
CAAGCCCGTC TTGCACTGGA TGATGAACTG CGCCTCAGGG TGGTTCGGGC CATGTACAGA 
ATGCGTTTCA ATGAGGAACC GCCACAACGA CGGAGCATTG AACAGTTACG GGGTGTAGAG 
GGCGCAAGAG TTCGCGCCTT ATATAAATTC CTGGCTGCAC AGTATAAGGT GACATGGGGG 
AAACGGTCTT ATGACCCCAG GGAATGGGAT GCCACTGATG TGGTGAACAA GGCCGTCAGC 
GTTGCCTGCC ATTGCCTGTA TGGAATCTGC GAGGCCGCTG TGCTCGCGGC GGGATATGCA 
CCTGCCATCG GATTTATTCA TTCGGGTAAA CCGCTTTCTT TTGTATATGA TGTTGCCGAT 
CTGTTCAAAT TTGAAACTGC AATCCCTGCT GCATTGTCTG TGGTGGCTAA AAAGCCAGGC 
AAGGTTGAAA GCGAGGTACG TTTGCGTTGT CGCGATCTTT TTAGAGAAAC GCGGTTGCTG 
CAAAAAATCA TTCCAGCCAT TGAAGAAGTG CTTTCTGCCG GAGGAATCGC CAAGCCAGAA 
CGTCCCCCCG AGGCAGTGCC CATAGCCATT CCCAACAAAA AGGGGCTTGG TGATGCTGGT 
CATCGTAACT GA
 
Protein sequence
MRLMSETVPL KERNSMLFLK YGRIDVEDGA FVLVDATGVR MQIPVGGVAC LFLEPGTTVT 
HAALALAADC GTLMVWVGEG GVRLYSAGQP GGARADRLLY QARLALDDEL RLRVVRAMYR 
MRFNEEPPQR RSIEQLRGVE GARVRALYKF LAAQYKVTWG KRSYDPREWD ATDVVNKAVS 
VACHCLYGIC EAAVLAAGYA PAIGFIHSGK PLSFVYDVAD LFKFETAIPA ALSVVAKKPG 
KVESEVRLRC RDLFRETRLL QKIIPAIEEV LSAGGIAKPE RPPEAVPIAI PNKKGLGDAG 
HRN