| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2781 |
|---|
| Symbol | |
|---|
| ID | 7272662 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2907964 |
|---|
| End bp | 2909634 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 643571366 |
|---|
| Product | DNA ligase I, ATP-dependent Dnl1 |
|---|
| Protein accession | YP_002467759 |
|---|
| Protein GI | 219853327 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1793] ATP-dependent DNA ligase |
|---|
| TIGRFAM ID | [TIGR00574] DNA ligase I, ATP-dependent (dnl1) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.543529 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCAGTTCT CGATCTTTGC TCAGACCTGC GCCGCCCTCG AAGCACAGAA CGGCCGCCTC
GAAATGAAGC ATGCGATCAG CGTCATTCTC CCGTCCCTCT CTGGAGAGGA CCTACCGATC
TTCATCCGGT TCCTGATGGG AAAGATCTTC CCTGACTGGT CGCCGCAGAA GCTCGGGATC
GGTCCGAACC TGCTCTACGA GGCGGTGGCC TACGTGGCAG GGACGAAGAA GACGGCCCTG
GTCGACCTGA TCAACAGAAC CGGAGATGCA GGGCTTGCTA TCGAACAGTT CCTTGCCACT
AAGGAGCAGA CGGCCTTCTT CACCGAGGAC CCGAGTCTCG CCGAGGTCTA CGCGGCCTGC
ACCCGGATCG CTGCCTCTGC AGGAGGCCGG TCCCAGCGCG AACGGTTGCT GGTCCTCCGA
CAACTCTTCG GTAACGTATC CCCCTTCGAG GCGCGGTATC TGGCCAGACT GATCCTCGGC
GAGCTTCGGA TCGGTATCGG GGAGGGGACG GTCCGGGATG CCATCGCTGA GGCCTACACG
GTCGAACCGG CGCAGGTCGA GCATGCGATG CAGGCGCTCA ATGACCTCGG CGAGGTGGCC
CTTCGGGCCA GAGAGGGTGA GGAGGGACTG ATCCACCTGA GCATCGCCCC GTTCAGGCCG
GTGAAGATGA TGCTCGCTCA GGCAGGGACG ACGATCCCAG AGATGCTGGC TGCTCACGGC
GAGGTGGCCG TGGAGTTCAA GTACGACGGA ACCCGGTTCC AGTTCCATAA AGAGGGGAAG
ACCTGCCGGA TCTACTCCCG GAAACTCGAG GAGGTGACCG ATGCCGTTCC CGAAGTCGGC
GAGGCCCTGC TCGGAGCCAC AGACCATGAC GTGATTCTGG ACGGCGAGGT GATCGCTATC
GGGGCTGACG GCCGGCCGCT CCCGTTCCAG ACCGTGCTCC GGCGTTTCCG GCGCAAGCAC
GGGATCGCGG CCGCCCGGGA GGCGATCACC CTGGTTCCAA GGGTCTTCGA CATCCTGTAC
CGCGATGGCG AGACCCTGAT CGACCTGCCA TTCCAGAGCC GGCGTGCGAT CCTATCAGCA
ACGATCGGTC CGGAGTACCT CGCCCCGCAG CAGGTGCTCT CCAGTGCCGA GGCGGTCGAC
CTTCTCTACC TGGAGGCTAT GGCCGAGGGG CACGAAGGGG TGATGCTCAA GGATCTCCTT
TCCCTGTACT CCCCAGGAGT CCGGGGGAAG CACTGGGTGA AGATCAAACC CGAGGTGGAG
ACCCTCGACC TTGTCGTCAT CGGTGCTGAA TGGGGCGAAG GACGGCGCGC CAGGACCTTC
GGTTCGTTTC TACTTGCCTG TCTGGATCAG GGGGTCTTCC GGGCGGTCAG CAAGGTGGCC
ACTGGCATAT CAGACGAGCA GCTGCAGGAG CTGTACACGC TCTTCAAAGA CCAGGTGATT
GCTGAATCAG GGAACACCGT CACCTTTGAA CCAACGGTGA TCTTCGAGGT CGGCTACGCC
GAGATCCAGA AGTCCCCGTC GTACGAGAGT GGGTACGCCC TCAGATTCCC GCGTTTTGTC
CAGGTCAGAG ACGACAAGGC GGTAGAGGAG ATCGAGACCC TTGAGAGCCT CACCACTCGG
TACCTGGCGC AGAAGACCCA GGCGAACGGA CAGCCTGAGT TCACGTTATA G
|
|---|
| Protein sequence | MQFSIFAQTC AALEAQNGRL EMKHAISVIL PSLSGEDLPI FIRFLMGKIF PDWSPQKLGI
GPNLLYEAVA YVAGTKKTAL VDLINRTGDA GLAIEQFLAT KEQTAFFTED PSLAEVYAAC
TRIAASAGGR SQRERLLVLR QLFGNVSPFE ARYLARLILG ELRIGIGEGT VRDAIAEAYT
VEPAQVEHAM QALNDLGEVA LRAREGEEGL IHLSIAPFRP VKMMLAQAGT TIPEMLAAHG
EVAVEFKYDG TRFQFHKEGK TCRIYSRKLE EVTDAVPEVG EALLGATDHD VILDGEVIAI
GADGRPLPFQ TVLRRFRRKH GIAAAREAIT LVPRVFDILY RDGETLIDLP FQSRRAILSA
TIGPEYLAPQ QVLSSAEAVD LLYLEAMAEG HEGVMLKDLL SLYSPGVRGK HWVKIKPEVE
TLDLVVIGAE WGEGRRARTF GSFLLACLDQ GVFRAVSKVA TGISDEQLQE LYTLFKDQVI
AESGNTVTFE PTVIFEVGYA EIQKSPSYES GYALRFPRFV QVRDDKAVEE IETLESLTTR
YLAQKTQANG QPEFTL
|
|---|
| |