| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2309 |
|---|
| Symbol | |
|---|
| ID | 7270570 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 2456746 |
|---|
| End bp | 2458428 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643570914 |
|---|
| Product | methyl-coenzyme M reductase, alpha subunit |
|---|
| Protein accession | YP_002467317 |
|---|
| Protein GI | 219852885 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG4058] Methyl coenzyme M reductase, alpha subunit |
|---|
| TIGRFAM ID | [TIGR03256] methyl-coenzyme M reductase, alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAA TTGAGAGATC ACAGAAGCTC TTCCTGAAGG CACTCAAAGA GAAGTTTGCA
GGAGAGGACC CCGCAGGAGA ACACACTCAC TTTGCACGTG CAGGACTTGA GCAGTCCGAG
CGGAAGAGAG AGTTCATGAA GGAAGGTAAG AAGGTAGAGA TGGAGCGTGG GATCAGCCAG
TACGACCCCA AGCGCTGTCA TCTCGGCGGT ATCCCTCTCG GTCAGCGCCA GCTGATGACC
TACGAGATCA GCGGCACCGG CACCTTCGTC GAGGGCGACG ACCTGCACTT CGTCAACAAC
GCTGCGATGC AGCAGATGTG GGACGACATC CGCCGGACGA TCATCGTTGG TATGGACCTG
GCCCACAACA CGCTCCAGAA GCGTCTCGGC AAGGAAGTCA CTCCTGAGAC GATCAACGAA
TACCTCCACA TCCTCAACCA TGCAATGCCA GGGGCAGCCG TGGTTCAGGA ACACATGGTC
GAGACCCACC CATCACTCGT ATCGGACTGC TATGTCAAGG TCTTCACCGG TGACGACGAA
GTCGCCGACC AGATCGAGCC ACAGTACCTC CTCAACATCG AGAAACTCTT CCCGGCAAAG
TCTGCAGAGA AACTGAAAGC AGCAGTCGGT AAGTCGATGT TCCAGGCAAT CCACATCCCA
ACGACTGTCT CAAGAACCTG TGATGGTGGG ACCACCTCCA GATGGTCTGC GATGCAGATC
GGTATGTCCT TCATCGCGGC CTACAGAATG TGCGCCGGTG AGGCAGCAGT CGCTGACCTT
TCCTACGCAG CCAAGCACGC CGGCGTCATC CAGATGGCCG ACATCCTGCC AGCACGCCGT
GCACGTGGCC CGAACGAACC AGGTGGTATC AAATTCGGTA ACTTCTGTGA TATGATCCAG
GCAGACCGCA AGTATCCAAA CGACCCCGCA AAGGCATCCC TTGAGGTTGT CGGTGCAGGA
ACGATGCTCT TCGATCAGAT CTGGCTCGGA TCCTACATGT CCGGTGGTGT CGGGTTCACC
CAGTATGCAA CCGCAGCATA CACCGACAAC ATCCTCGACG AGTTCGTCTA CTATGGTATG
GACTACCTCA AGTCGAAGTA CGGCGGCTAC TCGCAAGCAC CGGCAACCCA GGAGGTCGTC
AACGACCTCG CAACTGAGGT CACACTGAAC GCCATGGAGC AGTACGAGCA GTTCCCAACC
ATGATGGAGG ACCACTTCGG CGGTTCTCAG CGTGCCAGTG TCATTGCAGC AGCATCAGGT
CTAACCACCT CAATCGGTAC CGGGAACTCC AATGCAGGTC TGAACGGTTG GTATCTCTCG
ATGCTCATGC ACAAGGAAGG ATGGTCACGT CTCGGTTTCT TCGGCTACGA CCTGCAGGAC
CAGTGTGGTT CAGCAAACTC AATGTCGATC AGACCGGATG AAGGTCTGCT CGGTGAACTC
CGTGGACCAA ACTATCCGAA CTATGCGATG AACGTCGGTC ACCAGGGTGA GTACGCTGCT
ATCTCCGGCG GTGCCCACTT CGGCCGTGGC GATCCATGGG TTCTAAACCC ACTGATCAAG
ATCACGTTCG CAGACCCCTC GCTGGTGTTT GACTTCTCTG AGCCACGCCG TGAATTCGCC
AAGGGAGCAA TCCGCGAGTT CATGCCAGCG GGCGAGCGCT CACTGATCAT CCCAGCGCGG
TAA
|
|---|
| Protein sequence | MAKIERSQKL FLKALKEKFA GEDPAGEHTH FARAGLEQSE RKREFMKEGK KVEMERGISQ
YDPKRCHLGG IPLGQRQLMT YEISGTGTFV EGDDLHFVNN AAMQQMWDDI RRTIIVGMDL
AHNTLQKRLG KEVTPETINE YLHILNHAMP GAAVVQEHMV ETHPSLVSDC YVKVFTGDDE
VADQIEPQYL LNIEKLFPAK SAEKLKAAVG KSMFQAIHIP TTVSRTCDGG TTSRWSAMQI
GMSFIAAYRM CAGEAAVADL SYAAKHAGVI QMADILPARR ARGPNEPGGI KFGNFCDMIQ
ADRKYPNDPA KASLEVVGAG TMLFDQIWLG SYMSGGVGFT QYATAAYTDN ILDEFVYYGM
DYLKSKYGGY SQAPATQEVV NDLATEVTLN AMEQYEQFPT MMEDHFGGSQ RASVIAAASG
LTTSIGTGNS NAGLNGWYLS MLMHKEGWSR LGFFGYDLQD QCGSANSMSI RPDEGLLGEL
RGPNYPNYAM NVGHQGEYAA ISGGAHFGRG DPWVLNPLIK ITFADPSLVF DFSEPRREFA
KGAIREFMPA GERSLIIPAR
|
|---|
| |