| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_2116 |
|---|
| Symbol | lysS |
|---|
| ID | 7271596 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 2247834 |
|---|
| End bp | 2249369 |
|---|
| Gene Length | 1536 bp |
|---|
| Protein Length | 511 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 643570730 |
|---|
| Product | lysyl-tRNA synthetase |
|---|
| Protein accession | YP_002467137 |
|---|
| Protein GI | 219852705 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1190] Lysyl-tRNA synthetase (class II) |
|---|
| TIGRFAM ID | [TIGR00499] lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGTCCAC ATGAGAGCCT GAATTTTGAT GCAGGCAGAC TTGAGAAGAT CGAGGCCCTG
TCAGCAGGGC ATCACCAACT CTATCCGTAC AGTTTTGACC GGACCACCTC AATCTGCGAG
ATCAAGTCCC GCTTCGCTGA CATCGGTCAT GAGAAGAGCG AGGAGTCGGT CAAGATCGCA
GGCCGGATCT ACACGATTCG CAACCATGGG AAGACCGTCT TCGCCGACCT TGGGGATGAA
CAGGGCCGGA TCCAACTCTA TATCAGAAAG AACGATGTAG GTGAGGAACA ATTCTCTCTC
TTCACCGAGC AGATCGACCG CGGAGATATC ATCGGGGTCA GTGGTCATCT CTTCCGGACC
AAACTCGGGG AGATCACCCT CTGGGTAGAC CAGTTGACCC TGCTCACCAA GTCGCTCTGC
CCGCTCCCGG AGAAGTTCCA TGGGCTCAAG GACACCGAGA CCCGGTACCG ACAGCGGTAC
GTGGATCTTA TCATGAATGA GAAGGCCCGG GAGACATTTC GTGTTCGGTC CAGGATCATT
TCGCTGATCC GGCAGTTCCT GGGCGAACGG GGTTTCCTCG AGTTTGAGAC TCCGACGCTC
CAACCGGTCT ATGGTGGTGC GAATGCACGA CCGTTCACCA CCTATCACAA CTTCCTCGAT
CAGACCTTCT TCCTCCGGAT CGCTACGGAG TTATACCTGA AGCGGCTACT GGTCGGCGGG
TTTGAGAAGA TCTTTGAGAT CGGGAAGAAT TTCCGGAATG AGGACATCGA CACCAGTCAT
AACCCGGAGT TCACATTGAT CGAGATCTAT GAGGCGTACC GGGATTACAA CGACATGATG
GACCTGATGG AGGAGTTCCT CTCCTCACTG GTCAATGCCA TCCATGGGTG TGACCAGGTC
ACGTTCGATG AGGTTGTCAT CTCCTTTGCA GGACCGTGGC GGCGGATCAC GATGGAGGAG
GCAGTCAGGG AGTATGCAGG GATCGATGTC CTTGCCACCT CGCTCGAAGA ACTGCAGGCT
TTTGCGATCG AACACGCCGT CCCCGAGTAC GAGAAGGCCG CCTCCCCCCG GGAGTTCCTG
GTTCTCTTCT TCGAGTTCTT CGCAGAGAAG CAACTGATCC AGCCGACCTT CGTCCACGAC
TTCCCCATTG AGAACTCCCC GCTCGCCAAG CGGCACAGAT CCAAGGAGGG GTTCACCGAA
CGGTTCGAAC TCTTCATCAA CGGGATGGAG ATCGCCAATG GTTTCTCAGA ACTGAACGAT
CCCATCGATC AGATGAACCG GCTCGAGGCT CAGGACAGAA AGAGGTTGTC CGGGGATCTC
GAAGCCCAGA TGGTCGACTA CGACTTCATC AACGCGCTTG GGTACGGGAT GCCCCCAACC
GGTGGTGTCG GGTTTGGTGT CGACCGGGTG GTAATGCTGC TGACCAACAA CACCTCGATC
AAGGAGGTGA TCCTCTTCCC GTCGATGAAG AAACCAGTCG CAGATGCACC TCCAAATGAG
GACGAATCGC AAGAAAAGCC GGCACCTCCG GCCTGA
|
|---|
| Protein sequence | MCPHESLNFD AGRLEKIEAL SAGHHQLYPY SFDRTTSICE IKSRFADIGH EKSEESVKIA
GRIYTIRNHG KTVFADLGDE QGRIQLYIRK NDVGEEQFSL FTEQIDRGDI IGVSGHLFRT
KLGEITLWVD QLTLLTKSLC PLPEKFHGLK DTETRYRQRY VDLIMNEKAR ETFRVRSRII
SLIRQFLGER GFLEFETPTL QPVYGGANAR PFTTYHNFLD QTFFLRIATE LYLKRLLVGG
FEKIFEIGKN FRNEDIDTSH NPEFTLIEIY EAYRDYNDMM DLMEEFLSSL VNAIHGCDQV
TFDEVVISFA GPWRRITMEE AVREYAGIDV LATSLEELQA FAIEHAVPEY EKAASPREFL
VLFFEFFAEK QLIQPTFVHD FPIENSPLAK RHRSKEGFTE RFELFINGME IANGFSELND
PIDQMNRLEA QDRKRLSGDL EAQMVDYDFI NALGYGMPPT GGVGFGVDRV VMLLTNNTSI
KEVILFPSMK KPVADAPPNE DESQEKPAPP A
|
|---|
| |