Gene Mpal_1782 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpal_1782 
Symbol 
ID7270328 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosphaerula palustris E1-9c 
KingdomArchaea 
Replicon accessionNC_011832 
Strand
Start bp1863085 
End bp1864488 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content57% 
IMG OID643570398 
ProductTPR repeat-containing protein 
Protein accessionYP_002466812 
Protein GI219852380 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACCTG AATCCGGGTC CGGATGGGAT GGTGAAACAG CGTACCAGAG TGGTGGTGCA 
GAACTTAGGA TCACCAGTAC ATCGGCTGAG ATAGCCCCGT TTGCAGAACT GGCAACCGCC
GCCACCCCTG AAGGGTGGTG CAGGCAGGGG ATGGCCGCCT ATACGACAGG TGCCTATGAG
GAGGCGGTGG ACTGTTACAA CCATGCCATC GAGGAAGATG CAGTACCGCA TCATGCCTGG
TTTGAACTGG GTGCGGCCCT CTACAATCTC GGCAGGTACC AGGAGGCCGT CGAAGCTTAC
GACCAGTACC TGGACCTGTC CGGTGATGAC GCAGACGGCT GGTATAACCG CGGTCTCTGC
CTTGGCATGG CCGGACAGCA CGAGGAGGCG CTCCTCTGCT TCAATGAGGT GCTGACCATC
GAACCGACCG ATACCGCTGC CCTCTATGCT GGTGCCGAAT GTCTCGAACG GACAGGGGAA
CTTTCAGAGG CAGTGCTCTG GTATCAGGAA CTGCACACAC TTGCTCCTGA TGAAGAGAAT
GCCTGGCTCC GGGAAGGCTA CGATCTGATC CGGCTGAAAC AGGTTGATCT GGCTGTTGCA
TGCTTCGATC ATCTCCTCTC TTCCGATGGC GGGAACCAGA GAGCCCTGCT GGCGAAGGCG
TTCTGTCTGG CTGAACGCGG AGATCCGGAT CAGGCGTTCT TGGTCTACGA CCAGATTCTG
TTGACCGATC CCGACTGTGA AGAGGCCTGG CTGGAGAAAG GGACACTCTG CAAGAAGACA
GGGAATCATC AGGAGGCTCT TCGATGCATC GAGATGGTCC TCGAGGAGCA TCCGGAGAAC
GAACGGGCCC TCATGGAGCG TGGCCATCTC CTCCGTCTTT GCGGGACGTA TCCAGAAGCG
ATCAGGTGTT ACCGGGAGGT GACAGCCCGC TCTCCAGAAA ATACCGAGGC ATGGTACCTG
ACCGGGCACT GCTATGCATC CCTTGAAAAG AATCTGGAGG CGATCGACTG CTTCGACCAG
GTGTTGAAGT TTGGGGATGT CGGCACACGG GGATACGTGG GGAAGGCCCG CTGTCTGATC
AGTATGGGCC GGTTCGTTGA CGCACTCGCC TGTTACGAGC AGATGATCGA GGCGGATCCG
CTGGACGAGA CGGCGTTCTA CCAGAAAGGA ATCTGTCTTG TCGCGCTCGA ACGTGAAAAA
GAAGCACTCG AATGCTTCAA CGAAGCTCTC GAACTCGAGC CGCTCTATGA GCGAGCGAAG
ATCGAACGGG ACAAGATCCT CGGGAAGATC GGCTGCTTTG AAGAGGAGCC CTGTTGCTAT
TCCGAGTACG ATCTGGATGA GGATCTCCCC AACCAGGATG AAGAATCGTA TGGAGACTAC
GGGTTCAGCG ATTACGAGGA CTGA
 
Protein sequence
MTPESGSGWD GETAYQSGGA ELRITSTSAE IAPFAELATA ATPEGWCRQG MAAYTTGAYE 
EAVDCYNHAI EEDAVPHHAW FELGAALYNL GRYQEAVEAY DQYLDLSGDD ADGWYNRGLC
LGMAGQHEEA LLCFNEVLTI EPTDTAALYA GAECLERTGE LSEAVLWYQE LHTLAPDEEN
AWLREGYDLI RLKQVDLAVA CFDHLLSSDG GNQRALLAKA FCLAERGDPD QAFLVYDQIL
LTDPDCEEAW LEKGTLCKKT GNHQEALRCI EMVLEEHPEN ERALMERGHL LRLCGTYPEA
IRCYREVTAR SPENTEAWYL TGHCYASLEK NLEAIDCFDQ VLKFGDVGTR GYVGKARCLI
SMGRFVDALA CYEQMIEADP LDETAFYQKG ICLVALEREK EALECFNEAL ELEPLYERAK
IERDKILGKI GCFEEEPCCY SEYDLDEDLP NQDEESYGDY GFSDYED