| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1154 |
|---|
| Symbol | |
|---|
| ID | 7270418 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | + |
|---|
| Start bp | 1184137 |
|---|
| End bp | 1184625 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643569787 |
|---|
| Product | transcriptional regulator, XRE family |
|---|
| Protein accession | YP_002466220 |
|---|
| Protein GI | 219851788 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4800] Predicted transcriptional regulator with an HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.501074 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTCAA AGAGAATTTT CGAGACCGAT TTCACCGCTG CGCTGAATGA GGAACTGGCG
AAAAAAAATA TGACGGTACG GGAACTCGCG GATCTCACGG GCATTCCTGT TTCCACGCTC
TATAAAATTT CCCTGGGTGA ACGCGATCCC CGCCTATCGA CGATCAAGAA GATCGTCGCG
GTCCTGGAGC CGGTACGGAA CCGGTTCATT GCGATCATCG CTGCAAAATT TCTGCTCGAT
AACCTTGCGA TACATGAGTT TGATCTCCAG GGAAAGAAGA TCGGGATACG GGGATATTCA
GCCAATTCAC TTGAGGATTG TATTATTGCC GCAGTTCACG CAGAAAAAGA AGGGGCTTCC
GGTATTATCT GTGCACCTGT CCTCGCATCG ATCGTCGAGA AGATTGTGGA TATTCCGGTC
GGGATGCTCC GCCCCGAGCA GTCCGTGGTC AGTGAAGCGA TTAAGACAGT AGTGAAACGG
GTCGAGTGA
|
|---|
| Protein sequence | MLSKRIFETD FTAALNEELA KKNMTVRELA DLTGIPVSTL YKISLGERDP RLSTIKKIVA
VLEPVRNRFI AIIAAKFLLD NLAIHEFDLQ GKKIGIRGYS ANSLEDCIIA AVHAEKEGAS
GIICAPVLAS IVEKIVDIPV GMLRPEQSVV SEAIKTVVKR VE
|
|---|
| |