| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1092 |
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| Symbol | |
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| ID | 7271009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | - |
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| Start bp | 1128539 |
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| End bp | 1131436 |
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| Gene Length | 2898 bp |
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| Protein Length | 965 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643569728 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_002466161 |
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| Protein GI | 219851729 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.20335 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.270177 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACTCG GCGGCGAACG GGGGTCGGTG CAGAATCCGT TCATCGACTA TGCAGAATCC
AAAAAATGGG AATATGTCCC GAAGGACCGG GCCACAGCAA TACGGGGCGG CACCACCGGC
ATCTTGTTCA AAGAGATCTT CATCGAACAG ATCTGCCGGC TCAACGACTC CTTCATGACC
CGTGAGCTCG CCACCGAACT CATAAAACGG ATCGGGCGCA TCCCTCCCAC CATCGAAGGA
AACCTCGTGG CATGGGAATA TCTCAAAGGA ATAAAAACAA TCTTTGTCCC TGCAGAGAAA
CGGGAACGCA ATGTCCAGTT CATCGACACC AAGGATATCG AGAACAACAC CTTCCATGTC
ACAGACGAGT TTTCGTTCAC CAACGGTTCT AAGACGATCC ACGAGGATGT CGTCTTCCTC
GTCAACGGGA TCCCGGTCTT CTTTGTCGAG GCAAAGGCAG CCCACAAGAA GGAGGGGATC
GCGGAAGCCC TCGACCAGAT CCGACGTTAC CACCGCGAAT GCCCCGAACT GCTCGCCATC
CTCCAGATCT ACGCCCTCAC CCACATCATC CGGTATTATT ACAGTGCCAC CTGGAATACC
TCAAAGAAGA CACTCTTCAA CTGGAAGGAT GAAGCCGGCG GGAATTTCGA GACACTGGTC
AAGACCTTCT GTGACCGGAA ACGGTTCCTC ACCCTGCTCA GCGACGGGAT TCTTTTCACC
AGACAGGATG AGGAGTTAAA GAAAGTCATT CTCCGCCAGC ACCAGATGCG GGCCGTCGAC
AAGCTGCTCG GACGGGCACA GGATGCCTGG AAGAAACGCG GCCTTGTCTG GCACACGCAG
GGATCGGGCA AGACCTACAC GATGATCGTA GCGGCACAGA AGATACTCGG TGAACCGGTC
TTTGGGAACC CGACCGTGAT CATGCTCGTG GACCGGAACG AGCTCGAAAC CCAGCTCTTC
GGTAACCTCA CCTCTGCCGG CATTGGAAAT GTCGAAGTCG CAGGGAGCAA AAAGGATCTG
CGAGAACTCC TCGCAGCTGA TCACCGGGGC CTCATCGTCT CAATGATCCA TAAGTTTGAG
GGGATGCCGG AAGAGATCAA TACCCGGGAC ACGATCTTCA TCCTCGTGGA CGAAGCCCAT
CGCACCACCA CCGGCACACT CGGTAACTAC CTCATGGGTG CACTCCCGAA TGCCACCTAC
ATCGGGTTCA CCGGCACCCC CATCGACAGG ACCGCATACG GACAGGGGAC CTTCATCACG
TTCGGGCGAG ACGACCCACC ATACGGTTAC CTCGACAAGT ACAGTATCGC AGAGTCCATC
AGTGACGGGA CCACCGTCCC GCTCCACTAC ACCCTCGCTC CCAACGATCT GCTCGTCGAC
CGTCAGACCC TCGAACAGGA ATTCCTTGAC CTGGCCGAGA CGGAAGGTAT CAGCGATGTC
ACGGAGCTCA ACAAAGTCCT TGAAAAAGCG GTCAACCTCC GAAATATGAT GAAGAGTCCG
GAACGGGTGC CGAAAGTGGC GCAGTTCGTG GCAGATCACT TCCGGAACAA TGTGGAGCCC
ATGGGATACA AGGCGTTTTT TGTCGCTGTC GACCGGGAGG CCTGTGCACT CTACAAAAAG
GAACTCGACA AACATCTCCC CCTGCAGTAC TCGGAAGTCA TCTACAGTCC AAATCCCAAG
GATGATGACA ATCTCCGAGC GTATTATCAT ACTGATGAGG ATGAAAAACG CATCCGTAAG
GCGTTCCGGA GCCCGGAAAA AGACCCGAAG ATCCTCATTG TTACGGAAAA ACTCCTCACA
GGGTTTGATG CCCCCGTTCT CTACTGTATG TATCTCGACA AACCGATGCG GGATCATGTC
CTCCTGCAGG CAATTGCCCG CGTGAACAGG CCGTTTGAAG ATGAAGAAGG ACGCAAAAAA
CCTTCTGGGT TCGTACTCGA TATTGTCGGG ATCTTCAATA ACCTCAAAAA AGCGCTCGCC
TTTGATTCCA GTGATATCGA AGGTATCATC GATGATCTGG ACGTTCTTAA AAAACAGTTC
ACCCGGCTGA TGGGACAGGA AGCACAACAG TATCTCGGGC TTGCCAGAGG AAAGAAACGC
GACAAGGCAG TCGAAGCCGT GCTTGAATAT TTCCTGAACG AAGAAATCCG CCAAACATTC
TACGCATTCT TCCACGAACT CTCGGATATC TACGAAATCC TCTCCCCCGA TGCGTTCCTG
AGACCGTACC TCGACGATGT GGACAAACTA GCGAAAATGT ACCGCATGGT CCGGGAAAAT
TTTGATCCCG GTATCTCAGT TGACCGGGAG TTCTCCCGCA AGGTGGCTCG ACTCGTACAG
GACCATACCG TCAGCAGCGA GATCGGGAAC CCAGGCGGAA TCTATGAGAT TAACGACAAG
GTTATCTGGT ATATCAATGA GCAACCGGAT TCAGACATCG AAAAGGTCTT CAATCTAACC
AAAGGGATTT CTCATCTCGT ACAGAAACAA GCAGAAGAAT CTCCTTACCT CATCTCCATT
GGTGAAAAGG CGGATGCGGT GATCCAACTC TACAAGGACC GCCAGAATAC TACGCAGGAA
ACCCTCGCTG AACTCAAGAC GATCATTGAA GAGATCAACG CAGCTCGTCT CGAACAGGAG
AAGCGTAATA TCCCCATGGC AGAATTCTCC ATCTTCTGGC TTCTCAACAA AGCTGGTGTT
AGCGATCCGG AAACGAAAGC CCATGAAATG AAGAATATTC TGAACCACTA TCCCCACTGG
AGAATCAGCG AACAACAGGC TCGCGATGTG AAACAGGAAT TGTATTCGAT AATTCTGCAT
TCCGAAACCC GTGACATCAA AGAGATCAAA AAGATCATTG ACCAGATCAT GAAAGTTCTC
AATCGGGTAG TTACATGA
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| Protein sequence | MTLGGERGSV QNPFIDYAES KKWEYVPKDR ATAIRGGTTG ILFKEIFIEQ ICRLNDSFMT
RELATELIKR IGRIPPTIEG NLVAWEYLKG IKTIFVPAEK RERNVQFIDT KDIENNTFHV
TDEFSFTNGS KTIHEDVVFL VNGIPVFFVE AKAAHKKEGI AEALDQIRRY HRECPELLAI
LQIYALTHII RYYYSATWNT SKKTLFNWKD EAGGNFETLV KTFCDRKRFL TLLSDGILFT
RQDEELKKVI LRQHQMRAVD KLLGRAQDAW KKRGLVWHTQ GSGKTYTMIV AAQKILGEPV
FGNPTVIMLV DRNELETQLF GNLTSAGIGN VEVAGSKKDL RELLAADHRG LIVSMIHKFE
GMPEEINTRD TIFILVDEAH RTTTGTLGNY LMGALPNATY IGFTGTPIDR TAYGQGTFIT
FGRDDPPYGY LDKYSIAESI SDGTTVPLHY TLAPNDLLVD RQTLEQEFLD LAETEGISDV
TELNKVLEKA VNLRNMMKSP ERVPKVAQFV ADHFRNNVEP MGYKAFFVAV DREACALYKK
ELDKHLPLQY SEVIYSPNPK DDDNLRAYYH TDEDEKRIRK AFRSPEKDPK ILIVTEKLLT
GFDAPVLYCM YLDKPMRDHV LLQAIARVNR PFEDEEGRKK PSGFVLDIVG IFNNLKKALA
FDSSDIEGII DDLDVLKKQF TRLMGQEAQQ YLGLARGKKR DKAVEAVLEY FLNEEIRQTF
YAFFHELSDI YEILSPDAFL RPYLDDVDKL AKMYRMVREN FDPGISVDRE FSRKVARLVQ
DHTVSSEIGN PGGIYEINDK VIWYINEQPD SDIEKVFNLT KGISHLVQKQ AEESPYLISI
GEKADAVIQL YKDRQNTTQE TLAELKTIIE EINAARLEQE KRNIPMAEFS IFWLLNKAGV
SDPETKAHEM KNILNHYPHW RISEQQARDV KQELYSIILH SETRDIKEIK KIIDQIMKVL
NRVVT
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