| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_1023 |
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| Symbol | secD |
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| ID | 7271757 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 1050619 |
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| End bp | 1052142 |
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| Gene Length | 1524 bp |
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| Protein Length | 507 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 643569660 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_002466094 |
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| Protein GI | 219851662 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCAAGC GAGAGAAGAT TAAGAGAAAC AGTGAGACCG AAGCGGTTCC TATGACCCGG
ACGGGGAAGG GGATCGATTG GAAGGCACTG CTGACCGACT GGCGTGTCGC ATTGGTGCTG
ATACTGGTTG TGCTCTCAGT GATTGCAATC TATCCTCACT TCGACAGCGA TGGAAAACTC
ACTACCGACA TACAATACGG CCTTGACCTG CAGGAAGGGG CTTGGATACA ACTTGAACTG
AAGTCAGAGG TCGTCACGTT CGAGACCACC AACAAGACTG CAGACTTCAT CGCAGCCCTC
GACAAGCAGC TCGATACCCA GGTGGAGTCG ACGGGAGCGA ACCAACTTGA GATTAGGAAG
GCGTTCACGC AGGATCAATT GACCACAGCC TTCCAGGCGG CCGGTGGCAA ACTGGATACA
TATCAACAGG GTGTCACCAA GTCGACAGCT GAGGATGTAA AACGGATCCT TGAGAACAAG
ATCAATAGCC TCGGCACCAA GGACGCCAAG GTGAACACCC TCTCCGGCCT GAACGGTGTC
ACCCAGTATA TTCGGGTTGA ACTCGCTGGC GTGGATATGA ACACGGCTCA GGAGATCGTC
GGAAAGCAGG GTAAGTTTGA GATCAGGATC AACACCACAG ATAACCAGTC TGAGCATGTG
CTCTATGGTG ATTCGATCAC CAGCGTCTCG ATGCCCTCAC AGAGTCCGGT TGGCTCGGGC
AACTGGGGTG TCGGGTTCAC GCTCTCTGAT GCCGGCGCGG CCGCGTTCAG AAACGGTTCG
ATCCAGTATG GGGCCGTCGA TGACCCATCC AACCACAACC TGGTGATGAT ACTCGACAAT
CAGTCGGTAT ACAGTGCCCC GCTCAGCAGC GACCTTGCTG CCAAACTCCG TGCATCGCCG
AGTGTCAAAG AACTCTTTGC CTCGACCGGT TCCGGAACAG ATGGGCAGAA CTCAGCGCAG
AACCTGGAGA TCCACCTCCG TGCCGGGGCC CTCCCGGTCG ATGTCTCGGT CGCCGGGTCT
GGTTCAGTTT CTGCCTCCCT TGGCGAGCAC TTCAAGCTGA TGTCCATTCT GGCCGGGCTC
TTCGCCTTGA TCACTGTCGG GCTGGTCATC TTCTTCCGGT ACCGGGAACC CCTGATTGTG
CTCCCGATGA TCGGGACCAA CATGGCAGAG ATCGTTATCC TGCTCGGGAT CGCCCGGTTC
ACACAGCAGC TGGACCTGGC AACAATTGCA GGGTTGATTG CTGTGCTGGG TACAGGGATC
GACCAGTTGA TCATCATCAC TGACGAGGTG CTCCATGAGG GGAGGGTTCC TTCGCCGAAC
CTGTACCTGA AACGGCTCTC ACGTGCGCTT GGGATCATCG TCATATCGGC GCTGACGGTC
TTCATGGCCA TGCTCCCACT GGCGGTGATG TCCCTCTCGA CATTACGCGG GTTTGCGATC
ATCACGATCC TCGGTGTGTT GATTGGTGTG ATCATCACCC GGCCGGCATA TGGGCGGATT
ATCATGGCGA TTCTGTCACG ATAA
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| Protein sequence | MTKREKIKRN SETEAVPMTR TGKGIDWKAL LTDWRVALVL ILVVLSVIAI YPHFDSDGKL
TTDIQYGLDL QEGAWIQLEL KSEVVTFETT NKTADFIAAL DKQLDTQVES TGANQLEIRK
AFTQDQLTTA FQAAGGKLDT YQQGVTKSTA EDVKRILENK INSLGTKDAK VNTLSGLNGV
TQYIRVELAG VDMNTAQEIV GKQGKFEIRI NTTDNQSEHV LYGDSITSVS MPSQSPVGSG
NWGVGFTLSD AGAAAFRNGS IQYGAVDDPS NHNLVMILDN QSVYSAPLSS DLAAKLRASP
SVKELFASTG SGTDGQNSAQ NLEIHLRAGA LPVDVSVAGS GSVSASLGEH FKLMSILAGL
FALITVGLVI FFRYREPLIV LPMIGTNMAE IVILLGIARF TQQLDLATIA GLIAVLGTGI
DQLIIITDEV LHEGRVPSPN LYLKRLSRAL GIIVISALTV FMAMLPLAVM SLSTLRGFAI
ITILGVLIGV IITRPAYGRI IMAILSR
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