| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0442 |
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| Symbol | rpl3p |
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| ID | 7272766 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 459322 |
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| End bp | 460335 |
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| Gene Length | 1014 bp |
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| Protein Length | 337 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 643569088 |
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| Product | 50S ribosomal protein L3P |
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| Protein accession | YP_002465539 |
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| Protein GI | 219851107 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0087] Ribosomal protein L3 |
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| TIGRFAM ID | [TIGR03626] archaeal ribosomal protein L3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00631361 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.320791 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAAATA TACACAGGCC ACGTAGAGGA TCACTTGCAT ACAGTCCTCG CAAGCGTGCA
AAGAGCCAGG TTCCAAAGTA TCACTCTTGG CCTGCCCGCG ATGGAGAGCC AATCCTCCAG
AGTTTTGCAG GGTACAAGGT GGGTATGACG CACGTGATCA TGGTCGATGA CCATAAGAAC
AGCCCTACCG AAGGTAAGGA CATTATGGTC CCGGTGACGA TCATTGAGAT CCCGCCGATG
AAGGTTGCGG CTATCCGTGC ATACACTGCG GACACCTATG GAAAGCGGGC ACTGACCGAG
GTCTGGACAG AGCAGTTGAG TACGCTGCTT GGACGAAGGA TCACCCTTCC GAAGAAATAC
AGCGAGGAAG CAGGCTTCAA GGCACTTTCC GAGGCTGTTG CAGCGGGAAC TGTCACTGAA
CTGCATGCCC TGATGTACAC TCAGCCTGAC ACCCTGACCG GTGTTCCAAA GAAGGTTCCT
GAACTGATGG AGGTCTGTAT CGGTGGCGGG ACACTCGAGC AGAAGGTCGA GTTCGCTCAG
TCCATCATCG GCAATGAGGT GAACCTCGCT GATGTGATTG GGGCCGGAGA GTACGCCGAT
GTGACTGCGA TCACCACCGG AAAGGGAACC CAGGGTCCAG TCAAGCGCTG GGGGATCATG
CTCCGGAAGA GAAAGCACTC CCGTGGCGGT AAGAAGCGGC ATATCGGTAA CCTTGGTCCG
TGGAATCCCC ACCATGTCAG ATGGCAGGTT CCCCAGATGG GTCAGATGGG ATACCAGCAG
CGGACCGATT TCAACAAGCG GATTTTGAAG ATCGGCGAGA ATGGAACAGA TATCACCCCC
GCGGGTGGTT TCCTCCACTA TGGTCTGCTT CGGAATCCGT ATGTGATGAT CAAGGGCTCT
GTGCCTGGAC CGGTCAAGCG TTTGATCAGG ATTCGGCCAG CAGTCAGGAA AGGAGAGCAT
CATGCACGCG TACCAGCAAT CGAGTTTGTG AGTACACAAA GCAAGCAGGG ATGA
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| Protein sequence | MANIHRPRRG SLAYSPRKRA KSQVPKYHSW PARDGEPILQ SFAGYKVGMT HVIMVDDHKN
SPTEGKDIMV PVTIIEIPPM KVAAIRAYTA DTYGKRALTE VWTEQLSTLL GRRITLPKKY
SEEAGFKALS EAVAAGTVTE LHALMYTQPD TLTGVPKKVP ELMEVCIGGG TLEQKVEFAQ
SIIGNEVNLA DVIGAGEYAD VTAITTGKGT QGPVKRWGIM LRKRKHSRGG KKRHIGNLGP
WNPHHVRWQV PQMGQMGYQQ RTDFNKRILK IGENGTDITP AGGFLHYGLL RNPYVMIKGS
VPGPVKRLIR IRPAVRKGEH HARVPAIEFV STQSKQG
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