Gene Mpal_0402 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMpal_0402 
SymbolsdhA 
ID7271428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosphaerula palustris E1-9c 
KingdomArchaea 
Replicon accessionNC_011832 
Strand
Start bp417240 
End bp418928 
Gene Length1689 bp 
Protein Length562 aa 
Translation table11 
GC content65% 
IMG OID643569047 
Productsuccinate dehydrogenase flavoprotein subunit 
Protein accessionYP_002465499 
Protein GI219851067 
COG category[C] Energy production and conversion 
COG ID[COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.309781 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCTCTC GAACTCACCA CACGTTTCTT TATCTAATTA TAAATCCCCT TCATAATAAG 
ATGCGTGCAG ATAACGTTGT GGACTGTCAT GTGCTGGTGA TCGGGAGCGG CGGAGCCGGG
GTGCGTGCCG CCATCGAGGC CGCACCATAT GGGGAGACCG TCCTGATCTC CAAGACGATC
GTCGGAAAGG GTGGCTGCAC CACGATGGCC GAGGGGGGCT ACAATGCCGT CCTCCGCCAG
CAGGACTCCT GCACATCCCA CTACGAGGAC ACGCTGAAGG GCGGGGCCTA CCTCAACGAG
CCGGCCCTCG TCAGAGCGCT GGTCGAGGAG TCGCCCGACC GGCTGGCAGA CCTGCTCGCC
TGGGGAGCGG TCTTTGATAT GGAGGATATG ACCGAGCTCG CCCAGCGGCC GTTCGGCGGG
CAGCGGTTTC CGAGGACCTG CTATGCCGGC GACCGGAGCG GACACGAGAT GATGATGACC
CTTGTCTCCC GTCTGGCTCT GACCGATGTC ACGGTGATGC AGGAGGTGAC GGTGGTCGAA
CTCTTAAAGG ACGGCGACCG GGTCGCCGGG GCGATCGCCC TCGATCAGAA TGGGGAGATG
CTCCTGATCC GGGCGGACAG CACCGTCATC GCCACCGGCG GCGGGTCCCG GATCTATGAC
ATCTCGACCA ACTCATCGAG CGGCACCGGC GACGGCTACG CACTCGGTTA CCGGGCTGGG
GCGGAGCTGA TCGACATGGA GATGGTCCAG TTCCACCCGA CCGGGGCGGT CTATCCGTAC
GATGCACGCG GCCGGCTCGT CACCGAGGCG GTCAGGGGCG AGGGCGGCTA CCTGATCAAC
TCGATGGGCG AGCGGTTCAT GGACAGTTAC GACCCAGAAC GGATGGAACT CTCGACCCGC
GACGTGGTGG CCCGGGCGAT CGCCACCGAG GTGCTCGAGG CCCGCGGGAC CACGCACGGG
GGGGTGTACC TGGACGTCAC CCACCTGCCG GCGGCGCAGA TCGAACTCCG GCTGCCGGTG
ATGCTCGAAC AGTTCCTCCT CTATGGGGTG GACATTCGAA AGGACCCGAT CGAGGTGGCG
CCGACGGCGC ATCACTTCAT GGGCGGGCTC CGGATCACCC CGGACTGCCA GACCACGCTC
CCCGGACTCT TTGCCTGCGG TGAGTCCAGC GGTGGCGTCC AGGGGGCGAA CCGGCTCGGC
GGGAATGCAC TGGCTGAGAC GCAGGTCTTT GGCAGGCGTG CCGGCCTCTC TGCCGGCCTG
GCCACGGTCA GGAAGCATGC GATCGATCCG GCGCAGGTGG AAGCACAGGA AGCGAGGCTT
GAGCAGTTCC GAAAAGGAAC CAGTCTCCCC TCCGAGGTCT CGCACCGGCT GCAGAAGGTG
ATGTGGGACG GGGCCGGGAT CTTCCGGACG GCCGCCGAGT TGCAGGAGAC CCGGGAGACC
GTCGCAGACC TGGCCCGGAT CCCGCTCCGT GCTGTCTCCG TTCAGAACCT GGTCGAGTGC
TGCACCGTCC AGAATATGTG CCTGACCGCC TCGCTGGTCA TCCGGGGGGC CCTGCTGCGG
AACGAGTCCC GCGGGGCTCA CCTCAGAAAG GACGTCGAGC AGGACTGGAC GCCGAAGCAT
TCGCCGTTTG GACATACCTT CCTCTCGCTG GCCGGCGAAG GGATCGAGCG ACGGGAGGTG
CCGGTATGA
 
Protein sequence
MSSRTHHTFL YLIINPLHNK MRADNVVDCH VLVIGSGGAG VRAAIEAAPY GETVLISKTI 
VGKGGCTTMA EGGYNAVLRQ QDSCTSHYED TLKGGAYLNE PALVRALVEE SPDRLADLLA
WGAVFDMEDM TELAQRPFGG QRFPRTCYAG DRSGHEMMMT LVSRLALTDV TVMQEVTVVE
LLKDGDRVAG AIALDQNGEM LLIRADSTVI ATGGGSRIYD ISTNSSSGTG DGYALGYRAG
AELIDMEMVQ FHPTGAVYPY DARGRLVTEA VRGEGGYLIN SMGERFMDSY DPERMELSTR
DVVARAIATE VLEARGTTHG GVYLDVTHLP AAQIELRLPV MLEQFLLYGV DIRKDPIEVA
PTAHHFMGGL RITPDCQTTL PGLFACGESS GGVQGANRLG GNALAETQVF GRRAGLSAGL
ATVRKHAIDP AQVEAQEARL EQFRKGTSLP SEVSHRLQKV MWDGAGIFRT AAELQETRET
VADLARIPLR AVSVQNLVEC CTVQNMCLTA SLVIRGALLR NESRGAHLRK DVEQDWTPKH
SPFGHTFLSL AGEGIERREV PV