Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mpal_0402 |
Symbol | sdhA |
ID | 7271428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosphaerula palustris E1-9c |
Kingdom | Archaea |
Replicon accession | NC_011832 |
Strand | + |
Start bp | 417240 |
End bp | 418928 |
Gene Length | 1689 bp |
Protein Length | 562 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 643569047 |
Product | succinate dehydrogenase flavoprotein subunit |
Protein accession | YP_002465499 |
Protein GI | 219851067 |
COG category | [C] Energy production and conversion |
COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.309781 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCTCTC GAACTCACCA CACGTTTCTT TATCTAATTA TAAATCCCCT TCATAATAAG ATGCGTGCAG ATAACGTTGT GGACTGTCAT GTGCTGGTGA TCGGGAGCGG CGGAGCCGGG GTGCGTGCCG CCATCGAGGC CGCACCATAT GGGGAGACCG TCCTGATCTC CAAGACGATC GTCGGAAAGG GTGGCTGCAC CACGATGGCC GAGGGGGGCT ACAATGCCGT CCTCCGCCAG CAGGACTCCT GCACATCCCA CTACGAGGAC ACGCTGAAGG GCGGGGCCTA CCTCAACGAG CCGGCCCTCG TCAGAGCGCT GGTCGAGGAG TCGCCCGACC GGCTGGCAGA CCTGCTCGCC TGGGGAGCGG TCTTTGATAT GGAGGATATG ACCGAGCTCG CCCAGCGGCC GTTCGGCGGG CAGCGGTTTC CGAGGACCTG CTATGCCGGC GACCGGAGCG GACACGAGAT GATGATGACC CTTGTCTCCC GTCTGGCTCT GACCGATGTC ACGGTGATGC AGGAGGTGAC GGTGGTCGAA CTCTTAAAGG ACGGCGACCG GGTCGCCGGG GCGATCGCCC TCGATCAGAA TGGGGAGATG CTCCTGATCC GGGCGGACAG CACCGTCATC GCCACCGGCG GCGGGTCCCG GATCTATGAC ATCTCGACCA ACTCATCGAG CGGCACCGGC GACGGCTACG CACTCGGTTA CCGGGCTGGG GCGGAGCTGA TCGACATGGA GATGGTCCAG TTCCACCCGA CCGGGGCGGT CTATCCGTAC GATGCACGCG GCCGGCTCGT CACCGAGGCG GTCAGGGGCG AGGGCGGCTA CCTGATCAAC TCGATGGGCG AGCGGTTCAT GGACAGTTAC GACCCAGAAC GGATGGAACT CTCGACCCGC GACGTGGTGG CCCGGGCGAT CGCCACCGAG GTGCTCGAGG CCCGCGGGAC CACGCACGGG GGGGTGTACC TGGACGTCAC CCACCTGCCG GCGGCGCAGA TCGAACTCCG GCTGCCGGTG ATGCTCGAAC AGTTCCTCCT CTATGGGGTG GACATTCGAA AGGACCCGAT CGAGGTGGCG CCGACGGCGC ATCACTTCAT GGGCGGGCTC CGGATCACCC CGGACTGCCA GACCACGCTC CCCGGACTCT TTGCCTGCGG TGAGTCCAGC GGTGGCGTCC AGGGGGCGAA CCGGCTCGGC GGGAATGCAC TGGCTGAGAC GCAGGTCTTT GGCAGGCGTG CCGGCCTCTC TGCCGGCCTG GCCACGGTCA GGAAGCATGC GATCGATCCG GCGCAGGTGG AAGCACAGGA AGCGAGGCTT GAGCAGTTCC GAAAAGGAAC CAGTCTCCCC TCCGAGGTCT CGCACCGGCT GCAGAAGGTG ATGTGGGACG GGGCCGGGAT CTTCCGGACG GCCGCCGAGT TGCAGGAGAC CCGGGAGACC GTCGCAGACC TGGCCCGGAT CCCGCTCCGT GCTGTCTCCG TTCAGAACCT GGTCGAGTGC TGCACCGTCC AGAATATGTG CCTGACCGCC TCGCTGGTCA TCCGGGGGGC CCTGCTGCGG AACGAGTCCC GCGGGGCTCA CCTCAGAAAG GACGTCGAGC AGGACTGGAC GCCGAAGCAT TCGCCGTTTG GACATACCTT CCTCTCGCTG GCCGGCGAAG GGATCGAGCG ACGGGAGGTG CCGGTATGA
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Protein sequence | MSSRTHHTFL YLIINPLHNK MRADNVVDCH VLVIGSGGAG VRAAIEAAPY GETVLISKTI VGKGGCTTMA EGGYNAVLRQ QDSCTSHYED TLKGGAYLNE PALVRALVEE SPDRLADLLA WGAVFDMEDM TELAQRPFGG QRFPRTCYAG DRSGHEMMMT LVSRLALTDV TVMQEVTVVE LLKDGDRVAG AIALDQNGEM LLIRADSTVI ATGGGSRIYD ISTNSSSGTG DGYALGYRAG AELIDMEMVQ FHPTGAVYPY DARGRLVTEA VRGEGGYLIN SMGERFMDSY DPERMELSTR DVVARAIATE VLEARGTTHG GVYLDVTHLP AAQIELRLPV MLEQFLLYGV DIRKDPIEVA PTAHHFMGGL RITPDCQTTL PGLFACGESS GGVQGANRLG GNALAETQVF GRRAGLSAGL ATVRKHAIDP AQVEAQEARL EQFRKGTSLP SEVSHRLQKV MWDGAGIFRT AAELQETRET VADLARIPLR AVSVQNLVEC CTVQNMCLTA SLVIRGALLR NESRGAHLRK DVEQDWTPKH SPFGHTFLSL AGEGIERREV PV
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