| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0259 |
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| Symbol | dapF |
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| ID | 7270645 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosphaerula palustris E1-9c |
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| Kingdom | Archaea |
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| Replicon accession | NC_011832 |
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| Strand | + |
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| Start bp | 288352 |
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| End bp | 289185 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 643568910 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_002465366 |
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| Protein GI | 219850934 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase
[TIGR00654] phenazine biosynthesis protein PhzF family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTATACA CAACGATCTC AATCCCTTTT TGTAAACTGC ATGGCAACGG CAACGACTTT
CTGCTGATCG ACGAACTTGA GGGTACCCGG ATTCCTGACC AGATGAAGGG CGAGTTTGCG
GAGTTGTACT GCGATCGTCG GTTTGGGGTC GGCGCTGACG GCGTTCTCTT TCTCTCTGCG
GGTACCGAGG GCGATCTCCG GATGCGTATC TTCCAACCGG ACCGAAGTGA GGCCGAGATG
TGTGGCAACG GGATCCGATG CTTTGCCCGG TATGCTTTCG ATCAGGGATA CTTCACGGAG
ACCTGCAACG TCGAGACCCC GGCCGGAGTG CTCCCGGTTC ATGTCTCCAT AGGTGACAGT
ACGTTTCTGG CACAAATTCA TATGCCCGAT CCGGCGTTCG ACTGTCCAGG GATCCCGGCC
ACAGGAGAGG GCGTCTACCA GCAGACGATC GCAGGGCTCA CCGTCCATGC GACCAACACC
GGTGTCCCGC ATGCGGTCGT GATCGTCGAC GATCTCGCGG CAGTGGATGT CCCGGGGCTC
GCCCCCCAGA TCCGGCACCA CCCCTCTTTC TTGAAGGGAG CGAATGTGAA CTTTGTCCAG
GTGACGGGTC CTGATGCGAT CAGCGTTCGT ACCTTTGAAC GCGGTGTCGA GGATGAGACC
CTCTGCTGTG GGACCGGTGC CACCGCCTCG GCCGCCGTCG CCCACCGCCT TGGCCTCGTT
GGGGACCATG TCGCGGTCGA GACCGCTGGC GGGCCACTCT GGATCACCCT CGGCAAGGAG
ACCCTGATGG AGGGGCCTGC GGTGACCGTC TTTGTTGGGG AGATCCCTCT CTGA
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| Protein sequence | MVYTTISIPF CKLHGNGNDF LLIDELEGTR IPDQMKGEFA ELYCDRRFGV GADGVLFLSA
GTEGDLRMRI FQPDRSEAEM CGNGIRCFAR YAFDQGYFTE TCNVETPAGV LPVHVSIGDS
TFLAQIHMPD PAFDCPGIPA TGEGVYQQTI AGLTVHATNT GVPHAVVIVD DLAAVDVPGL
APQIRHHPSF LKGANVNFVQ VTGPDAISVR TFERGVEDET LCCGTGATAS AAVAHRLGLV
GDHVAVETAG GPLWITLGKE TLMEGPAVTV FVGEIPL
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