| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpal_0143 |
|---|
| Symbol | |
|---|
| ID | 7270913 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosphaerula palustris E1-9c |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_011832 |
|---|
| Strand | - |
|---|
| Start bp | 168411 |
|---|
| End bp | 169490 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 643568801 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002465259 |
|---|
| Protein GI | 219850827 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1668] ABC-type Na+ efflux pump, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.467996 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.00277637 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | GTGAAATTCC GGACGGTTTA TATTATTTGC AAAAAGGAGA TACAGAGCCT GTTGAACGAG
CGGACGCTGA TCCTTGCGAT CATGCTCCAG GTCTTCATCG CTCTCTTCTC CTCATTCCTG
ATGGTCGGGC TCACCTCGAT GTACGACCCT GCGGCGATCT CCCGGTACTC GCATGCCGAA
TACGGGATCG GCTACGCAGG GAACGATTCA ACGCTCGCGT CGTACATCGA CCAGGCAAAG
GACCTCAAGG TCTACCCGAT GGACCTCTCC ACCGGCCTCG CAGCCCTCTC TGAGCGAAAA
CTCTCTGCAG TGGTCTATGT CCCCGATACC CGACCGGATG CGATCGATCC GATCAGGGTC
ACGCTGTACA CCCAGCAGAA CGATCTCCAA TCGGCCGTCG TCAATGTCCG ACTGAAGGAC
GCCTTCGTCG CCTACGAGAA GGAGCTCCGG CAGGTCCGGG CGGCCAGGAT CACCGAGGTG
CCGATCCCCC TCAAGTTCCC TGCCCAGACC GAAGGTACCG ACTTCTTTGA GTTCGTCTAC
GGGCTGCTCA TCCCCCTGCT GGTCTTCATG CCGGCGATCA TCTCGTCGGC GATGATCATC
GATCTGATCA CTGAGGAGTA CGAGCACCGA ACCCTCGAGG TGCTGCTCAC CGCCCCGGTC
TCGTTCGCCG AGGTGATCTG GGGCAAGATC GCGGCCTGCC TGGTACTGGT TCCAATCCAG
GCCGGCGCCT GGATGGTGTT GCTGCAGATG AACGGGATCG GGATCCTGCA CGGACCAGAG
ATCCTCTTCC ATGTCACGGC CGGGTCATTT CTGCTGGTGC TGCTCGGAGC GTTGACGGCC
CTTCACTATC GGGAACGGAC CTCAGCACAG TTCATCTTCT CGACGGCGCT GGTGATCGTG
ATGCTCGGGG CCCTGGCCTT CCCGCTGAAC CCCCTGAACC TGATCGCACG GCTGAGCATC
GGGGCGATTG GAGACGAGCA CTGGATCATC CTGGCCGGTG TGCTAGCGGC GATCGTTCTC
CTCTCGATGC TGACGACGAA GTACGCTGGG ATCATCACCA GGCGGTTCAT CGAGGGATGA
|
|---|
| Protein sequence | MKFRTVYIIC KKEIQSLLNE RTLILAIMLQ VFIALFSSFL MVGLTSMYDP AAISRYSHAE
YGIGYAGNDS TLASYIDQAK DLKVYPMDLS TGLAALSERK LSAVVYVPDT RPDAIDPIRV
TLYTQQNDLQ SAVVNVRLKD AFVAYEKELR QVRAARITEV PIPLKFPAQT EGTDFFEFVY
GLLIPLLVFM PAIISSAMII DLITEEYEHR TLEVLLTAPV SFAEVIWGKI AACLVLVPIQ
AGAWMVLLQM NGIGILHGPE ILFHVTAGSF LLVLLGALTA LHYRERTSAQ FIFSTALVIV
MLGALAFPLN PLNLIARLSI GAIGDEHWII LAGVLAAIVL LSMLTTKYAG IITRRFIEG
|
|---|
| |