| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Cagg_2850 |
|---|
| Symbol | |
|---|
| ID | 7267556 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Chloroflexus aggregans DSM 9485 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011831 |
|---|
| Strand | + |
|---|
| Start bp | 3500761 |
|---|
| End bp | 3501576 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 643567671 |
|---|
| Product | Rhomboid family protein |
|---|
| Protein accession | YP_002464148 |
|---|
| Protein GI | 219849715 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGTC CACCTGATGA GTCTGATGAG ATTGAAGCCT TTTTACGCCG GGCTGAACGT
GAATTTGGTC GTCGCCCCGA CTTGGAGGAG AACACGCCAC CACCACCGCC GCGTCCTGCG
ATCCCGCGAC CGGTTGTAAC CTACAGTCTG CTCTGGATCA TCGGAATTGT CTATCTCTTG
AGTTGTGTGC TCAGTGGTTC GTTCTTTCAG CCTACGTTGT CGGTGCTGGT CGTTTTGGGA
GCAAAGGTCA ACGAACGGAT CGCTGCCGGT GAGGTATGGC GCTTGCTGAC GGCAACCGTT
CTGCACGCAA ATCTCATTCA TATCTTTTTT AACGGCTATG CACTTTCGGT ATTGGGGCCG
GAGACCGAGC GGTTTTACGG GCACGTTCGT TTTCTGGTGT TGTACCTACT CAGTGGTGTG
GGTGGTAGTA TCGCATCGTA TGCGCTCTCG TCGGCACCGG CAGTTGGGGC AAGCGGGGCT
ATCTTCGGCT TGATCGGCGG CTTAGGCATG TTTTACTACC TCAACCGACA GGTATTGGGT
CAGTTCGGTC AAGATCAGGT ACGTGGGATT GTCGCAATTG CCGTTATCAA CTTGCTGATC
GGTTTTGCTG CCCAAGGCGT CATCGATAAC TGGGGGCATC TGGGCGGATT GGTCAGTGGT
GTAGTGGTGA GTCTTGCGCT CTCTCCTCGA CTCACCATCG ATTCGCGATT TTTTCCACCA
TTACTGATTC GTCGTTTTCC GCGGCAAGGC TGGCTCTGGG TGACAGCATT TACCTTAGGT
ATGATGGTGT TGGTGCGCTT GGTGCAGCCG GCGTAG
|
|---|
| Protein sequence | MTRPPDESDE IEAFLRRAER EFGRRPDLEE NTPPPPPRPA IPRPVVTYSL LWIIGIVYLL
SCVLSGSFFQ PTLSVLVVLG AKVNERIAAG EVWRLLTATV LHANLIHIFF NGYALSVLGP
ETERFYGHVR FLVLYLLSGV GGSIASYALS SAPAVGASGA IFGLIGGLGM FYYLNRQVLG
QFGQDQVRGI VAIAVINLLI GFAAQGVIDN WGHLGGLVSG VVVSLALSPR LTIDSRFFPP
LLIRRFPRQG WLWVTAFTLG MMVLVRLVQP A
|
|---|
| |