Gene Cagg_2530 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_2530 
Symbol 
ID7269376 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp3081108 
End bp3083477 
Gene Length2370 bp 
Protein Length789 aa 
Translation table11 
GC content54% 
IMG OID643567356 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_002463837 
Protein GI219849404 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.471952 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGATG TAATAACTAC CGATCAATCT CCCGATACAA TAACAGACGC ACCGGATCGT 
CCAGCGTCGA GTGATGAACT TCCCCCTCCA GCCGATCTCC TGTTACAGCA CAACGTTATG
CTCCTCATCG TTGAGCAACA AAAACGACGG GGGTGTCAAG CATCGCTCGA AACGGTACAA
GCCGATTTTG TCAGTGCCTA TCACTCGCCA TCGGTTGAAG CGCTTATTTA TCGCCACCGC
GAATATCTCC CCTCTGCTGA TTTCGATCTC ATCCGCCGCG CCTATGCTCT CGCCGCCGTT
GCCCACGAAG GCCAACGACG CCAATCAGGT CAACCTTATA TCGATCATCC GATTGAAGTT
GCGATCATTT TGCTCGATTT ACGACTCGAT ACCGAGTCGA TTGCTGCCGC GCTGTTGCAC
GATGTCGTCG AAGATACCGG TGTCCCGATT GAGGTGATCG AGCGCTTTTT CGGCAAACAA
GTCGCGAATT TGGTTGACGG CGTTACTAAA CTTTCCGGTT ACGAAAATAA AACGAGAGAG
GAGATACAGG CCGGCACCTA CCGTAAGTTA ATTATCGCTT CGGCTGACGA TCCGCGGGTA
GTGCTGATCA AATTGGCCGA CCGCCTGCAC AACATGCGCA CGATCCACGC GACGCCCCCC
AACAAACAGC AGCGAGTAGC CCGTGAGACG CTCGACATCT ACGCACCGCT CGCTCACCGT
CTCGGTATGT GGCAGATGAA GTCGGAGTTG GAAGATCTCG CGTTTAAAGT CTTGCACCCC
GACCGGTATC AAGAGATAGC GCGTGGGCTT GCCATGCGTA AAGAGGCGCG CGATCGGATC
GTGCAACGGG TGATAGCGCA GTTGAAGGAG GCCTTGGCGC GTGAAGGGAT TAAGGCTGAA
GTCACCGGAC GATCAAAACA TATCTATTCG ATTTGGCGCA AGATGGAGCG CAAAGGGGTG
CCGCTTGAGC GTATCTACGA CCAACTGGCC GTGCGCATTA TCGTCGATGA TCCTAACAAC
GAAGTGGGGG CTTGCTACCA GGCGCTGGGT GTTGTCCATA GTAAGATGAA CTGGACGCCG
GTGATGCAAG AATTTGACGA CTACATCGCT GCCCCTAAAG AAAGTTCGTA TCGCTCGATC
CATACTACCG TGATTTTGCC GGAGGGGCTG CATTGCGAAG TGCAGATCCG CTCGCGGAAA
ATGCATGAAG AAGCCGAACA CGGGATCGCT GCGCACTGGC GCTACAAAGA GGGTTTTAAT
ACTCGTAGTG ATAAAGATTA TGAAAATAAA ATTCGCTGGT TGCGAGAGTT GATCTCGTGG
CGCAATGAGA CCACCGACAG CGAATTTATC GACATGCTGC GCGCCGAGTT TGAAGAGCGC
GTGTTTGTAT TTACACCAAA AGGCAAGATT ATCGATCTGC CCGAGGGTTC CACCCCGATC
GATTTTGCCT ATCGCATTCA CTCTGAAGTT GGGAACAATT GCATTGGCGC CAAAGTCAAC
GATCGGATGG TGCCGCTCGA TTATGAGTTG CACAGCGGCG AAATCGTCGA GATTCTGACC
TCGAAGACGC CACGTGGGCC AAGCCGCGAC TGGCTTCGGA TCGTGAAGAC TCCCTCGGCG
CGTAATCACA TCAAGCGCTA CTTCCGACGG CTCGAACGCG AAGAGAATAT CGCTGCGGGG
CGGGAGATGT TGGAGAAAGA ATTAAAGCGC GTTGGGCTGA CCCATGTGAG CTTTGAGAAG
CTGGTTGAGT TGGCCGGGCC GACGGTGCGC TCAGTTGAGG ATCTCTTTTA CCAAATCGGG
GTTGACGACC TCAACGAGCG GACTCTCGTG CAGAAGTTGT TGGCCTCGCA GGAGGCGGCG
CCCGAATCGG TCGCTGTGCC GACGCCTACC CAGCCCTCGG CGCGCGTCAG TGCTAACGGT
GAAATCTATC TCGATAAAAA CGTGAAGATA CCTTCACGCA TCGCACGTTG TTGCAATCCG
GTGTTTGGTG AGCCAATTAT CGGTTTTACA ACTCGTGGCC GCGGTGTTAC CGTCCATCGC
GCCGATTGCC GAACTATTCA GCACCTCAGT GCTACCGAGC GTGAACGGCT CATGCCGGTT
TGCTGGGGCA GCGCGACGGG GTCGAATCAG CAATTCCCGG TGCCACTACG GATTGAGGCA
TGGGATCGGG TTGGTTTGTG GCGTGATATT TCTAACGTGA TTGCTGAGGC CGGGATTAAT
ATCACCGATG TCAATCACGG AAAACGCCGA GCGAATGGAC GCACGGTCTT GAATGTCACG
GTTGCGCTAC AATCGATGAC CCAACTGTCA CCGCTCATCG AAAAACTCAA CCGCATTCCT
GACGTAATCG ACGTATATCG TAAAACGTAG
 
Protein sequence
MDDVITTDQS PDTITDAPDR PASSDELPPP ADLLLQHNVM LLIVEQQKRR GCQASLETVQ 
ADFVSAYHSP SVEALIYRHR EYLPSADFDL IRRAYALAAV AHEGQRRQSG QPYIDHPIEV
AIILLDLRLD TESIAAALLH DVVEDTGVPI EVIERFFGKQ VANLVDGVTK LSGYENKTRE
EIQAGTYRKL IIASADDPRV VLIKLADRLH NMRTIHATPP NKQQRVARET LDIYAPLAHR
LGMWQMKSEL EDLAFKVLHP DRYQEIARGL AMRKEARDRI VQRVIAQLKE ALAREGIKAE
VTGRSKHIYS IWRKMERKGV PLERIYDQLA VRIIVDDPNN EVGACYQALG VVHSKMNWTP
VMQEFDDYIA APKESSYRSI HTTVILPEGL HCEVQIRSRK MHEEAEHGIA AHWRYKEGFN
TRSDKDYENK IRWLRELISW RNETTDSEFI DMLRAEFEER VFVFTPKGKI IDLPEGSTPI
DFAYRIHSEV GNNCIGAKVN DRMVPLDYEL HSGEIVEILT SKTPRGPSRD WLRIVKTPSA
RNHIKRYFRR LEREENIAAG REMLEKELKR VGLTHVSFEK LVELAGPTVR SVEDLFYQIG
VDDLNERTLV QKLLASQEAA PESVAVPTPT QPSARVSANG EIYLDKNVKI PSRIARCCNP
VFGEPIIGFT TRGRGVTVHR ADCRTIQHLS ATERERLMPV CWGSATGSNQ QFPVPLRIEA
WDRVGLWRDI SNVIAEAGIN ITDVNHGKRR ANGRTVLNVT VALQSMTQLS PLIEKLNRIP
DVIDVYRKT