Gene Cagg_1708 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1708 
Symbol 
ID7269414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp2087979 
End bp2089313 
Gene Length1335 bp 
Protein Length444 aa 
Translation table11 
GC content54% 
IMG OID643566550 
Productputative PAS/PAC sensor protein 
Protein accessionYP_002463045 
Protein GI219848612 
COG category[T] Signal transduction mechanisms 
COG ID[COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones49 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCTTGA CGTGTGCCGG TGCGGTGCGG TTTAGCAGTC GTAATCTAGA CGAAATCTGG 
TTGCTTTCAG GGTTATTGAC CTCGCTGCAA GCAGTTATTT TTGGTTTTTT GATTTGGCTG
ATTATGCTCT TGTTCATGCC CCACCGCTAC CAACAACCAT GGTTGCGTTG GGCAGTATTC
ACACCATACC TCCTTATGGC CGTAGGGCTG GTCATCGATT GGTATGGTCG CTTTGGCTTT
GTCGGTCGTG ATGTGGTGCG TGAAACGAGC GGTCTGTTGG GCTTTGTGCG CGGCCCGGCA
TTCGTACCAG CCTTTACGCT GTACATCATC GGCTGCATTG TCATCCCGCT CATTATGCTC
ATCACCATCG CAATCCGACA ACCTGCTATG CGCGGGCCGG CGGTCTGGCT CATTATCGGT
ACTATCCTGA CGTTCCTTAT GGGATATATC TTTCGGGAAA TTGGCCTGGT GTCGGTGACG
TATGTTAGTC TCTTACCATT ACATTTGTCT TTTGGGTGGG TCACGCTACG CTACGGTGTC
TTTCGCCCTT CGCAAGTTGC GTTGCAAGCG GCGGTCGAAC ATCTACCTGA CGGAATGCTC
GTGCTCGACA CGCAACGACA GATACGCTAC GCCAATCGTG CGGCGCAACG CATTATCGCA
GGAAACGATA GAAATGAGCA GAGCTTCGAG CAAGCCCTTG CCCAAGCGGG GTTCATCGAG
CAGACGTCAA CCGAAGATCG TGAGCGGCAG CGACGGCGAT TTTTCCGACC TACCGATCAA
ACCATCTTGC TTGCCACTGA AGTGCCGATC AACGATGCAC AGGGTGGCGC GAGTGTCGTG
CTCATCCGTA ACGTGACCCG TGCGGAGCAA CAGCAAGCCG AGCTGATCGC CTCGCGCGCA
GCCCTCGCTG AACGCACCGC CGAACTCGAA CGTTCGTTGG CCGAATTACA ACAGCGTGAC
GAGTTACTCC GCCGGTTGAG CCTACCGATC ATCCCGCTGA GCGCCACCAT GGTGGTCGTA
CCGTTGATCG GTATATTCGA CGCGGCACGC TGTCAAAGCC TACTTCAACT CATACTACCG
GAAATTGCCG AACGAAACGC AAAAATGGTA TTGGTCGATC TCACCGGATT AACGGCGTTT
GACCAAACCC TCGCCCACAC GTTGTACCAA CTGCGCGATG GGGCGCATCT GATGGGGACG
CAGATTTTCT TGTGTGGTAT CCGACCAGAT TTAGCCGAGG TGATGATCCA CGCCGGTGGG
ATATGGAGCG GCCTGCGTTC GTTTGCTACG TTGCAAGACG GGGTGAAAGC GTTGCTAACA
AACACGATAC TGTAA
 
Protein sequence
MLLTCAGAVR FSSRNLDEIW LLSGLLTSLQ AVIFGFLIWL IMLLFMPHRY QQPWLRWAVF 
TPYLLMAVGL VIDWYGRFGF VGRDVVRETS GLLGFVRGPA FVPAFTLYII GCIVIPLIML
ITIAIRQPAM RGPAVWLIIG TILTFLMGYI FREIGLVSVT YVSLLPLHLS FGWVTLRYGV
FRPSQVALQA AVEHLPDGML VLDTQRQIRY ANRAAQRIIA GNDRNEQSFE QALAQAGFIE
QTSTEDRERQ RRRFFRPTDQ TILLATEVPI NDAQGGASVV LIRNVTRAEQ QQAELIASRA
ALAERTAELE RSLAELQQRD ELLRRLSLPI IPLSATMVVV PLIGIFDAAR CQSLLQLILP
EIAERNAKMV LVDLTGLTAF DQTLAHTLYQ LRDGAHLMGT QIFLCGIRPD LAEVMIHAGG
IWSGLRSFAT LQDGVKALLT NTIL