Gene Cagg_1544 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_1544 
Symbol 
ID7267321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp1889707 
End bp1891221 
Gene Length1515 bp 
Protein Length504 aa 
Translation table11 
GC content57% 
IMG OID643566386 
Productsecretion protein HlyD family protein 
Protein accessionYP_002462882 
Protein GI219848449 
COG category[V] Defense mechanisms 
COG ID[COG1566] Multidrug resistance efflux pump 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGAA TTTGGTTTCT CTTGATTGCA CTAGGTACTT CCATACTGAC CGGTTGCAGT 
CAGCCGGTGA TCTCTGAGCC TGAGTCGTCT GCAACAACTG TTCCTACTGA AGCAGCGGCA
GCACCGGCAC CCACTACTGA ACCGGTGATT GTAAACGGGA CGCTGATGGC TTCCGGTCGG
GTTCAGCCGA TGACGGTGCT TGATCTCAGC TTTGTAAACC CGGGTTCGGT GGCAGAGGTG
GTTGTGCAAC TCGGTGATCG GGTACAGGCC GGTGATGTGA TGGCGAGTCT CGATGTACGC
ACACTCGACT TGACAATTGC CGAGGCACGG GTGGCGTTAG CTGAAGCGCA AGCCAATTAC
GAACAGTTGA TTAGTGGGGC AACGCCCGAA CAGATCGAAC AGGCCGAAGT GGAGATTGCT
CGGGCGCGCG CACGCCTGGC CGATGGCCGC ACGAATGTGA CCCAGAGCGA TATTGCCGCA
GCGCAAGCTG AGCTGCGTGA AGCGAAGGCA GTGCTCGAAC GGCTCAAAAA GGGTATCACA
CCGGAAGACA AGGCGCGCCT CGAAGCTGCT GTAGCCGAAG CTCGTGCCCG GTTGCAGACT
CGGATCAATA CGCTCGCCGG TGAAAAGACG CAACTTGAAT CGCAGATCGA GCGCTTGGCA
AATGAGTTGC GTAACGCCCA AGATGACTAC TCGCGCACGA AGTGGGCGAA CGAACAGATC
ATCGCCAGCG GTGGTCAGTT AACGCAGGCC CAGATCGACA ACGAGACTCG ACTGTTGCGG
GCCGTGGAAA ATGCTGAGCA TCGGTTGCAA GAGGCTCGCG TAGCGCTGGA AACTGTGCGC
CAGAATGAGT TCAGCGAAAT CGCTGCGTAT CAGGCTGAAG TGCAACAATC GGAAGCGCTC
TTGGCCGAGG CGTTGCGTCC GGTAACACTC GATCAGATCG CGGCGGCGGA AAAGCGCATC
TTGCAAGCCG AGGCGAAACT GGCTCAGTTT ACGATCAATC ATCCCAACGA GGTAGCTGTG
TATGAGGCTG AGCTACGCAA GGCCGAGGCT GATTTGGCTC GTCTGACCGC TCCCCCCCCC
AGTGCGCAAA TCGCCATCGC GCAAGCACGG ATTGAGCGGG CCGAAATTGA GCTGCGCAAA
GCAGAACTCA ACCGTGAACG TTACCAAATT CGTGCCCCAA TCGACGGAAC CGTTGTAGGT
GTCTACGCCC AACCGGGTCA GACGGTTGAG GCTAGCCAGC GCGTGATTAC GTTGGCAACC
CTCGATCGGT GGCAGATTGT CGTGACCAAT CTGAGTGAGC TACACATCAG TCTGGTCCAA
GAGAACGATC CGGTGACCAT AAGCTTTATC GCGTTGCCTG ATGTTCGGTT GAGTGGAAGG
GTTAGTTATA TCGAACCGGT TGGTCAAGAG ACCGGAATCG GTACGACGTA TACCGTCCAT
ATTATTCCCG ATAGCTGGGA TCAGCGTCTG CGGTGGAATA TGAACGCGCA AGTGACTTTT
GCCGCAAGAC CGTAG
 
Protein sequence
MSRIWFLLIA LGTSILTGCS QPVISEPESS ATTVPTEAAA APAPTTEPVI VNGTLMASGR 
VQPMTVLDLS FVNPGSVAEV VVQLGDRVQA GDVMASLDVR TLDLTIAEAR VALAEAQANY
EQLISGATPE QIEQAEVEIA RARARLADGR TNVTQSDIAA AQAELREAKA VLERLKKGIT
PEDKARLEAA VAEARARLQT RINTLAGEKT QLESQIERLA NELRNAQDDY SRTKWANEQI
IASGGQLTQA QIDNETRLLR AVENAEHRLQ EARVALETVR QNEFSEIAAY QAEVQQSEAL
LAEALRPVTL DQIAAAEKRI LQAEAKLAQF TINHPNEVAV YEAELRKAEA DLARLTAPPP
SAQIAIAQAR IERAEIELRK AELNRERYQI RAPIDGTVVG VYAQPGQTVE ASQRVITLAT
LDRWQIVVTN LSELHISLVQ ENDPVTISFI ALPDVRLSGR VSYIEPVGQE TGIGTTYTVH
IIPDSWDQRL RWNMNAQVTF AARP