Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Cagg_0175 |
Symbol | |
ID | 7269090 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chloroflexus aggregans DSM 9485 |
Kingdom | Bacteria |
Replicon accession | NC_011831 |
Strand | - |
Start bp | 224629 |
End bp | 226137 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 643565047 |
Product | drug resistance transporter, EmrB/QacA subfamily |
Protein accession | YP_002461562 |
Protein GI | 219847129 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000293077 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000024964 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | GTGACCCACC AACGCACCGT CTTGATCACA CTCGGTGTGA TGATGAGTTT GTTTATGGCT TCGATGGAAT CGACGGTCAT TGCAACGGCT ATGCCGAGTA TTGTGCGCGA TCTTGGTGAT ATTACGGGTT TTAGTTGGGT ATTCGCCATC TATATGCTTA CCTCAACGAC TGCCGGGCCA ATATTTGGTC GCTTGTCGGA TCTGTTTGGC CGGCGACCGG TCTACCTCAC GGCCATTGCT ATTTTTAGCC TGGGTTCACT GGGGTGTGGG TTGGCAGCCA CCATGCCTCA ATTGATTATG GCCCGTGCAT TGCAAGGATT GGGTGCAGGT GGGTTATTGC CGTTGGCATT CATTATCGTG GGCGACATCT TTACGCTTGA GCAACGGGCG AAGGTCCAGG GTCTCTTTTC GGGAGTATGG GGGGTCAGCT CGGTGATTGG CCCACTGATC GGTGGGTTTT TGGTCGATCA GATTTCGTGG CATTGGGTCT TTTGGATCAA TTTACCGCCG GCTGCGATTG CTGCGGCGCT TGTGTGGATA GCATGGCGCG ATCCGGTTCG GGTGGCCGGC ACACGACCAC CCATTGACTA TGCCGGTGCT GCATTGCTGA GTGTGGGTGT TGTGTTGTTA TTGCTCGGCC TCAATGAACC GACATCGTTG CGCGGAATTG CTTTGCTGAG CGCTGCCGCC GCGACGTTAG CACTTTTGGT TATGGTCGAG CTACGGGCAC CGGCTCCCAT TCTACCGGTG CGTTTACTTC GTGAACGGAT GTTTGCCGTT GCGTGTCTGC ACGGTATTCT AGCCGGTGGC GTACTGTTCG GTAGTATGAA TTATGTCCCC CTCTTTGCCC AAGGCGTATT AGGGGCCAGT GCAACCGCAG CCGGCACCAC CCTAACGCCA ATGATGCTGG GTTGGGTATT CACCAGCATT ATCGGTGGTC GGTTGTTGTT GCGGTTCAGT TACCGTTCGT TAGTCATATG GGGAATGATC ATCTTCGTCG TTGGCGCACT CATGATGGCT CGTCTGCGTC CTGAAATGAG CCAACCGGAA TTGGCAGCGG CACTGGGATT GATGGGTATC GGTATGGGTG CGAGTATTCC CTCGTTCTTG ATTGCCGTGC AAAGTACGGT GGTAAGAAGC GTTTTGGGGG CGGCAACGGC AAGCTTACAA TTCGCACGTA CAATTGGAGG AACGATCGGT GTGGCAGCAC TAGGGACGCT GTTAACTAAC CGGTTGGCTA CCGAACTGGC CATGCGTGGT CTGCAACCTG ATGCCATACC GGTTGATGCC TTGCTCGGCG AAGGAGCAAC AACAGTGGTA TTGGCCGGCG AGCCGCGCCT GGCACTGGCA GCAGCGCTTG CGACTGTATT TACGGTACCG TTGATCTTTG CGCTGGCAGC CTTAGCCGTG ACCTTTTTTG CTCCGGCACA CAGCCCTGAT GATCTTCGTC GCAAACGCGA GTATGCCGAT AGTATGGCTG CAGCACCGCA ACAAGCGGGC GCTGATTAA
|
Protein sequence | MTHQRTVLIT LGVMMSLFMA SMESTVIATA MPSIVRDLGD ITGFSWVFAI YMLTSTTAGP IFGRLSDLFG RRPVYLTAIA IFSLGSLGCG LAATMPQLIM ARALQGLGAG GLLPLAFIIV GDIFTLEQRA KVQGLFSGVW GVSSVIGPLI GGFLVDQISW HWVFWINLPP AAIAAALVWI AWRDPVRVAG TRPPIDYAGA ALLSVGVVLL LLGLNEPTSL RGIALLSAAA ATLALLVMVE LRAPAPILPV RLLRERMFAV ACLHGILAGG VLFGSMNYVP LFAQGVLGAS ATAAGTTLTP MMLGWVFTSI IGGRLLLRFS YRSLVIWGMI IFVVGALMMA RLRPEMSQPE LAAALGLMGI GMGASIPSFL IAVQSTVVRS VLGAATASLQ FARTIGGTIG VAALGTLLTN RLATELAMRG LQPDAIPVDA LLGEGATTVV LAGEPRLALA AALATVFTVP LIFALAALAV TFFAPAHSPD DLRRKREYAD SMAAAPQQAG AD
|
| |