Gene Cagg_0076 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0076 
Symbol 
ID7269073 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp104847 
End bp106724 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content57% 
IMG OID643564949 
Productsigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_002461465 
Protein GI219847032 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTCTTC CATCCCTTCC GCCTATCCAA CGCTCATGGA TGCGCTGCCA GGCTCGCGGT 
CTTGATCCGG CAACCCCACC CCAAACGGGA CCGGTGAATA TAGCGGCTTG GAGCCACCTT
CAGACCCTCG CTCGCTCGTC GATTGAAGAT CTGTACCAAT TAAGTGAACA CCCCGGTTTT
GCCGTAGTAA TCTGCGATGA ACAGGCTACC ATCATTGATG TTGCCGGCGA TAGCACGATT
CTTAGTCTCG CGCAACAATC TGGCATTGGA TACGGTATTA GTCTGCTCGA AGAAGTAGCC
GGCACCAATG CCGTTGATTT AGCGTTGCGC GAGGCACTAC CCTACCAGAC GAGTGGTGAT
GAGCATTATT GCAATTGGTT GCAGCCGTTT AGTTTGGCGG CGGCACCAAT ATTCAGCCCA
GATGGCCGAG CGCTCGGAGC ACTGGCGATT CTTACTCGTG CCGAGATGCA ACACCCCTAT
GCCCTAGGGA TGGTTATTGC CGCAGCCCAG GCGTTGCACA ACCAGCTTCG TGCTGAACGA
TTACTCAACG AAGCGAATGA TCAACTGAGT GAACTCTACG CGACCCTCGA TAGTATTAAT
GAAGGGTTGA TCTTTGTCGG TCCTAACGGT GAGATTCGCC GTTTGAGCCG GCGCGTCGCC
TCCATCCTCG ATATTAATGT GCGTTCGGCA GCCGGTCGCC CGTTAGTAAG TGTTATTCCA
CCACCTCCGG CGATCAGTAC TGCACTGCAA GAACTTACCA CCCTCGATGA ACAGGAAGTG
ATCTGGCAGA CACGCTCTGG CCCACAAGCG GTGATGTGTA GCGTCCGACC GGTATGGGAT
CGGAGCCGAC GGTATCTAGG CAGTGTGATT ACGTTACGTC CGGCGGAAAG TGTGCGTCAA
TTGGTGCAAC AGGTTGTTGG TGCTCGTGCT ACCTTTACGT TTCGTGACAT TATTGGTCAG
AGTGAGGCAA TGCGGCAAGC GTTACGCCAG GCACGGCTGG CCGCAGCCGG TCGTGGTCCG
GTACTCCTTC GTGGCGAAGG CGGGGTAGGC AAAGAGATTT TCGCACAGGC TATCCATAAC
GCAAGTAACC GCGCCGGTGG GCCATTTGTG CGCGTCGCTT GTGCTGCCAT TCCCCGCCAA
TTGCTCGATA GCGAGCTGTT TGGCGTTGAA AGCTCTGAAC ACCAAGCCGG TCGGCCGGGA
AAGCTCGAAT TGGCTCATGG CGGGGTACTG TACCTCGAAG CCATCGATGC GCTCTCGTTC
GATCAACAGA CGAATCTGCT CCGCGCAATC GAGATGGGGC GTGTGATCCG GTCGGGGGGA
AAGCGTCCGA TCCCTATCGA TGTGCGCCTC ATTGTGACCG GCCACGATCT TGAACAGCTT
GTGCAAGAAG GCCGGTTTCG GGCCGATCTC TACGCACGAC TCAGCGCCTT TACTATCGAT
ATCCCACCAC TGCGCCGGCG CGGTGACGAC GTGCTGTTAC TGGCCAACCA TATGGTGCAG
CGCCTCAGCG AACAGCTCGG TCGCCCGATC GCACTCGCTC CTGATGCACT CGCCGCACTT
CACTCCTATC CATGGCCGGG AAATGTCCGT GAATTGGAGG TTGTCCTCGA ACAAACGGTG
CAAACGACGG CTAAGAGTGT ATTGACCGTT CACGATCTGC CACCGGCAAT TGCCCGGCAT
ACGACACCAC TGGCAATGGC CGATAACCCA CGCCTTGCTG AGGCCCATGC TCTTAGTGAA
CGCGACGCAA TTGTACGGGC AGTACGTAGT GCCGGCGGAC GGCTGAGCCG AGCTGCTACC
CTACTTGGGA TTAGCCGGGC AACCCTCTGG CGCAAGATTA CTCGCTATCA GATTTCACGT
GACGAATTAC GAGCCTGA
 
Protein sequence
MALPSLPPIQ RSWMRCQARG LDPATPPQTG PVNIAAWSHL QTLARSSIED LYQLSEHPGF 
AVVICDEQAT IIDVAGDSTI LSLAQQSGIG YGISLLEEVA GTNAVDLALR EALPYQTSGD
EHYCNWLQPF SLAAAPIFSP DGRALGALAI LTRAEMQHPY ALGMVIAAAQ ALHNQLRAER
LLNEANDQLS ELYATLDSIN EGLIFVGPNG EIRRLSRRVA SILDINVRSA AGRPLVSVIP
PPPAISTALQ ELTTLDEQEV IWQTRSGPQA VMCSVRPVWD RSRRYLGSVI TLRPAESVRQ
LVQQVVGARA TFTFRDIIGQ SEAMRQALRQ ARLAAAGRGP VLLRGEGGVG KEIFAQAIHN
ASNRAGGPFV RVACAAIPRQ LLDSELFGVE SSEHQAGRPG KLELAHGGVL YLEAIDALSF
DQQTNLLRAI EMGRVIRSGG KRPIPIDVRL IVTGHDLEQL VQEGRFRADL YARLSAFTID
IPPLRRRGDD VLLLANHMVQ RLSEQLGRPI ALAPDALAAL HSYPWPGNVR ELEVVLEQTV
QTTAKSVLTV HDLPPAIARH TTPLAMADNP RLAEAHALSE RDAIVRAVRS AGGRLSRAAT
LLGISRATLW RKITRYQISR DELRA