Gene Cagg_0050 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0050 
Symbol 
ID7269047 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp72641 
End bp73261 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content55% 
IMG OID643564923 
ProductRNA polymerase, sigma-24 subunit, ECF subfamily 
Protein accessionYP_002461439 
Protein GI219847006 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.552448 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.767054 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCGGGAC CAATTATCGA TCTATCACTC TACGACGATG AAGAAGCGCT CTTAGCCGGG 
TTACGTCGTG GTGATCCAGA TGCTTGTACG TGCTTTGTCA AGCGCTTCGC GCCGCTTGTC
TATGCACGTG CATTGCACCT GCTCGGTGAT GCAGACGATG CCGAGAACGT TTTGCAGACT
ACATTTATCA AGGCCTGTGC AGCCCTTCCT GAGTATACCG GATCCGGTAG CTTGCGAAGT
TGGCTGTACC GGATTGCGTC AAATGAAGGA CTGATGCTCT TACGCCAAAA GCGGGCGCAT
GTTGGTCTTG ATACCGTCGG CGAGATCGGG TCGGACGAGA CGACGAGTCA GTTTAAGACA
ATATCGCGAT GGGCAATCGA TCCGGCGCGC AGTGTGTTAG ACGGTGAATT GCGACGCGAA
ATTGCCAAAG CCATCGCTGA ATTGCCCGAT CCGTTGCGAG CCGTCATTGT ATTACGAGAT
ATTGAACAGT TAAGCACAGA GGAGACTGCC GAGCGGCTCG GCATCAGCCC CAGCGCGGTC
AAGGTTCGGT TACATCGCGC ACGGCTACGG TTGCGCGAGG CGCTGGCTCG TTATATGGAA
ACGACAGGTG AAGCCGATTG A
 
Protein sequence
MPGPIIDLSL YDDEEALLAG LRRGDPDACT CFVKRFAPLV YARALHLLGD ADDAENVLQT 
TFIKACAALP EYTGSGSLRS WLYRIASNEG LMLLRQKRAH VGLDTVGEIG SDETTSQFKT
ISRWAIDPAR SVLDGELRRE IAKAIAELPD PLRAVIVLRD IEQLSTEETA ERLGISPSAV
KVRLHRARLR LREALARYME TTGEAD