Gene Cagg_0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCagg_0020 
Symbol 
ID7269017 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChloroflexus aggregans DSM 9485 
KingdomBacteria 
Replicon accessionNC_011831 
Strand
Start bp30991 
End bp31680 
Gene Length690 bp 
Protein Length229 aa 
Translation table11 
GC content52% 
IMG OID643564893 
Producttwo component transcriptional regulator, LuxR family 
Protein accessionYP_002461409 
Protein GI219846976 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGTGTGA CAACGCTGAT CATCGTGCAT ACTGTTTCGC TCTTTCGCGA CGGTTTGCGC 
TATGCTTTGT CGTCAACACC GGAATATCGA GTGATCGGTG AGGCGAGTAA TGGTCAGCAG
GCGATCCAGT TGGTCGATCA AGCCGATCCC GATCTGGTTG TGATGGACAT TGATCTGCCC
GGTGTCCACG GGTTAGAAGT CGCACGTGTG ATCAAGCGTA GTCATCCGCA TATTGGTATC
ATCCTGTTTG GGCCAACCAA TGATGGTGCG ACGGTCGTCA AGGCGATCCG AGCCGGTGTG
TCGGCAATGG TTCCACCCAA TATTGAATTT GTCGATTTGC TAGCGACGCT TCACCAAGTG
CGCCGTGGTG AGTATCCGAT TAACGATCTC GTGCTCACTT CGCCAGAAGT TGCCGCAACC
GTGCTGGAAG CCTTTCGTCA GATGGTCGGT GATGATGATG TTCAGACGGT CTTTTCTCCG
CTCTCGGCAC GTGAGTTAGA AGTGTTGGAA TTGGTCGCTG CTGGGCGAAC GAACCGCGAA
ATTGCGGCTC AGCTCGATAT TAGTAACCAG ACGGTGAAGA ATCACATTTC GTCAATTTTG
CGTAAATTGG CCGTTAACGA TCGTACACAG GCCGTCGTGT ATGCGATGCG ACGTGGCTGG
ATTAAGGTCG TTCTGCCCGA CGGTTTGTAA
 
Protein sequence
MSVTTLIIVH TVSLFRDGLR YALSSTPEYR VIGEASNGQQ AIQLVDQADP DLVVMDIDLP 
GVHGLEVARV IKRSHPHIGI ILFGPTNDGA TVVKAIRAGV SAMVPPNIEF VDLLATLHQV
RRGEYPINDL VLTSPEVAAT VLEAFRQMVG DDDVQTVFSP LSARELEVLE LVAAGRTNRE
IAAQLDISNQ TVKNHISSIL RKLAVNDRTQ AVVYAMRRGW IKVVLPDGL