Gene Dhaf_4808 details

Gene Information

• Locus tag: Dhaf_4808
• ID: 7261837
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 5136348
• End bp: 5137055
• Gene Length: 708 bp
• Protein Length: 235 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 643564719
• Product: Peptidoglycan-binding LysM
• Protein accession: YP_002461239
• Protein GI: 219670804
• COG category: [S] Function unknown
• COG ID: [COG1652] Uncharacterized protein containing LysM domain

Plasmid Coverage information

• Num covering plasmid clones: 73
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCCTTAT CCTACAAGCG CTCTACAATG GGGGTGCTTT TTTTCTACCC CAAAAAGGAG 
GCGAATTGTT TGCGAAAATT CATCTTCAAG GATGGAAACC GGGAACTCCT GCTTCCCGTT 
ACGCCCCCGT CCTTTACGAT TACCCATGGT ATAAAGATAG AGACCATCCA TATTCATACT 
CTTGGTGATG TTAATATAGC GGGCTATGGG ACCCTTGCCG CCATCAAAAT AGACTGTCTC 
TTCCCTGCCC AGCCCTACCC CTTTGCCCTT ACCGATGAGA ATCCTTATAC CTATGTGAAG 
ACCTTTCAAA AATTCTGCGA TAAACGCAAA GTGATTCGCT TTGTTATCCC GGACACCCCC 
GTCAATCTCC CTGTTTTAGT TGAGTCCATT GCTTACTCAG AGCGGGACGG GACCCATGAT 
GTTTACGCTA CCCTTACTCT GCGCGAATAC CGGCAATTAA ATGCCGTAAA AGTTGAGCAA 
AGCGGAACTG AGAACCAACC CCGACCTGCC GCCGCAGCCA TCGACAAGCC CACAGCGTAT 
ACAGTCGAAA GCGGAGATAC TCTGAGCTCC ATCTGCCGAA AGCTTTATGG GGACGCCAAT 
CTCTATCCCA AAGTGGCTGA CGCTAATGGC CTAACAAATC CGCATTTGAT ATTTCCCGAA 
CAAATACTCA GCATGCCGGA TAAAAGCCAA TTGGTATCGG GGAGGTGA 

 

Protein sequence

MSLSYKRSTM GVLFFYPKKE ANCLRKFIFK DGNRELLLPV TPPSFTITHG IKIETIHIHT 
LGDVNIAGYG TLAAIKIDCL FPAQPYPFAL TDENPYTYVK TFQKFCDKRK VIRFVIPDTP 
VNLPVLVESI AYSERDGTHD VYATLTLREY RQLNAVKVEQ SGTENQPRPA AAAIDKPTAY 
TVESGDTLSS ICRKLYGDAN LYPKVADANG LTNPHLIFPE QILSMPDKSQ LVSGR