| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4734 |
|---|
| Symbol | |
|---|
| ID | 7261763 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 5053337 |
|---|
| End bp | 5056159 |
|---|
| Gene Length | 2823 bp |
|---|
| Protein Length | 940 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 643564645 |
|---|
| Product | excinuclease ABC, A subunit |
|---|
| Protein accession | YP_002461165 |
|---|
| Protein GI | 219670730 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0178] Excinuclease ATPase subunit |
|---|
| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.332226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAGA ACTTTATCAA AGTCCGCGGC GCCCGCGCCC ATAACTTGAA AAATATCAAT
GTGGATATCC CCAGAGACCA GCTGGTGGTT GTCACCGGCT TATCCGGCTC CGGAAAATCC
TCGCTGGCTT TTGACACCAT TTACGCTGAA GGTCAACGCC GCTATGTAGA ATCTCTGTCT
GCCTATGCCC GTATGTTTCT TGGGCAAATG GACAAGCCGG ATGTGGATTA TATCGAAGGC
CTGTCGCCGG CCATCTCCAT TGACCAAAAA ACGACCAACC GTAACCCCCG CTCTACAGTG
GGAACGGTGA CGGAAGTCTA TGATTATCTG CGTCTCCTCT ATGCCCGGGT CGGCCACCCC
CATTGTCCCC AATGCGGCAG AGAAATCAGC CAGCAAACGG TACAGCAAAT GGTGGATCAG
ATCATGGTCT ACCCGGAACG CACCAAGCTG CAAATTTTAG CCCCCTTAGT CAAAGGGAAA
AAGGGTGAGC ATGTCAAAGT GCTTGAAGAT GCCCGCAAGG CGGGATATGT ACGGGTAAGG
GTGGATGGTG AAAATCGGGA TTTAAGCGAA GAGATTAAAT TAGAAAAAAA TAAGAAGCAC
TCCATCGAAG TTGTGGTGGA CCGTATCGCT TTAAAGCCTG ATAGTGCGGT CCGTCTGGCC
GACTCCCTGG AAACGGCTTT GAAGCTGGGG GAAGGAAATG TCCTTGTGGA CATTATTGAT
AATACGGAAA TCCTGTTCAG TGAAAATTTT GCCTGCCCGG ACTGCGGTAT AGCCCTTGAA
GAGATCTCTC CCCGCCTTTT TTCTTTTAAC AGCCCTTATG GAGCCTGCCC TGATTGTACG
GGCTTAGGGG CCAATCTGGA AGTGGATATC GACTTGATCA TTCCTAATAA GAAGCTGAGT
CTCGGCGAAG GAGCCATCGT CCCCTGGGCC AAATCCCAAT CCAGCTACTA TCCGGCCATG
ATGGCGGCGG TCAGTGAAGC CCTCGGTTTT ACCATGGATA CTCCCTTGGC AGAACTCTCT
GAAGAGCAAT GGAAGGGCCT GCTGTACGGC ATTGCAAAGC CCATAAAATA CACGTTTATG
AGTTTCTTTG ACGAGAAGCC GAAAATTCAT TCAGGACCTT TTGAGGGGCT TATTCCCTTT
TTTGAGCGGC GCTACAAGGA ATCCACTTCC GATTATGTCC GAACTGAAAT CGAAAGCTTT
ATGAGCGAGC ATGATTGCCC TTCCTGCAAA GGAAAGCGCC TCAAGCCGGA GGCTTTAGCG
GTGACTGTAG GGGAGCTATC CATCGATGAT TATACCCGCT TGCCGATTAC AGAAGCGTTG
GAGTTTATCA CCCAATTGCA GCTTAGTGAA AAAGAGCAGA CTATCGCCCG GCAAATTCTC
AAGGAGGTTC GGGAACGCCT GGGCTTCTTA GTCAATGTAG GGCTGGATTA TCTTACCCTG
CATCGGGCGG CGGGGACCCT TTCCGGCGGA GAAGCTCAGC GGATTCGGCT GGCCACTCAG
ATTGGTTCCA GTCTGACGGG AGTTCTCTAT GTTCTGGATG AGCCCAGCAT CGGCTTGCAC
CAGAGAGATA ATGAAAAGCT CCTGACGGCT TTAAAGCATT TACGGGATTT AGGCAATACC
TTGCTGGTGG TTGAGCATGA TGAGGATACC ATGCTGACTG CGGATCATAT CATCGATATC
GGTCCGGGAG CGGGAGCCCA TGGCGGGCGG ATTATTGCCG AAGGAAAGAT TGAGGAGATC
AAAGCCAATG TTGAATCCAT CACCGGGCAA TATTTGAACG GCACCCGGAG AATTCCTGTT
CCTGCTGAAA GAAGAAAGCT CAACGGCAAG TGGCTGGAGG TTAAAGGAGC CCGGGAAAAT
AATCTGAAGA ACATCAATGT CCGCATTCCT CTTGGCGTTT TTAATGTGGT CACAGGTGTA
TCGGGTTCGG GAAAAAGCAC CTTGGTCAAT GAGATTGTTT ATAAGACCTT GGCCACCAAG
CTTAATAAAG CGACGAAGCT GCGCGCCGGG CTCCATAAGG CTGTTGAAGG TTTGGAGCAT
CTGGATAAGG TCATAGATAT CGACCAATCC CCGATCGGCC GCTCGCCCCG TTCCAATCCT
GCCACTTACA CTGGAGTATT TGATTATATT CGTGAACTTT TCTCCCATAC TCCCGAGGCT
AAAATGCGTG GTTATGCTAC CGGGCGCTTT AGTTTCAATG TCAAGGGCGG GCGCTGTGAA
GCTTGTAAAG GGGATGGTAT CATCAAGATT GAGATGCACT TCCTCCCGGA TGTCTATGTT
CCTTGTGAGG TTTGCCGGGG AGCCCGCTAT AACCGCGAGA CCCTGGAAGT GAAATATAAG
GGAAAAAGCA TTGCGGAAAT CCTGGATATG ACGGTGGATG AGGCGGTGGA ATTTTTCCAG
GCTGTTCCCC GGATTTTACG GAAGATGCAA ACCCTGCAGG ATGTGGGGCT GGGTTATATC
CGGCTCGGTC AGCCGGCGAC TACCCTGTCC GGTGGTGAGG CTCAGCGGAT TAAACTGGCC
ACTGAACTCA GCCGGCGCAG CACGGGCAAG ACGATCTATA TTTTGGATGA GCCGACCACG
GGGCTGCATA TGGCCGATGT GGATCGTTTG CTGGAAGTGC TGCACCGCCT TGTGGATGGG
GGCGATACCG TCCTGGTCAT TGAGCATAAC CTGGATGTGA TCAAGACTGC GGATTATCTC
ATTGATCTTG GTCCGGAAGG GGGCAGCGGC GGAGGCCGGG TGGTCGTTAC AGGAACCCCG
GAAGAAGTTG CCGCTTGCCC AACATCTTAC ACCGGCAAGT TCCTCAAAAA ATATCTGAGC
TGA
|
|---|
| Protein sequence | MTQNFIKVRG ARAHNLKNIN VDIPRDQLVV VTGLSGSGKS SLAFDTIYAE GQRRYVESLS
AYARMFLGQM DKPDVDYIEG LSPAISIDQK TTNRNPRSTV GTVTEVYDYL RLLYARVGHP
HCPQCGREIS QQTVQQMVDQ IMVYPERTKL QILAPLVKGK KGEHVKVLED ARKAGYVRVR
VDGENRDLSE EIKLEKNKKH SIEVVVDRIA LKPDSAVRLA DSLETALKLG EGNVLVDIID
NTEILFSENF ACPDCGIALE EISPRLFSFN SPYGACPDCT GLGANLEVDI DLIIPNKKLS
LGEGAIVPWA KSQSSYYPAM MAAVSEALGF TMDTPLAELS EEQWKGLLYG IAKPIKYTFM
SFFDEKPKIH SGPFEGLIPF FERRYKESTS DYVRTEIESF MSEHDCPSCK GKRLKPEALA
VTVGELSIDD YTRLPITEAL EFITQLQLSE KEQTIARQIL KEVRERLGFL VNVGLDYLTL
HRAAGTLSGG EAQRIRLATQ IGSSLTGVLY VLDEPSIGLH QRDNEKLLTA LKHLRDLGNT
LLVVEHDEDT MLTADHIIDI GPGAGAHGGR IIAEGKIEEI KANVESITGQ YLNGTRRIPV
PAERRKLNGK WLEVKGAREN NLKNINVRIP LGVFNVVTGV SGSGKSTLVN EIVYKTLATK
LNKATKLRAG LHKAVEGLEH LDKVIDIDQS PIGRSPRSNP ATYTGVFDYI RELFSHTPEA
KMRGYATGRF SFNVKGGRCE ACKGDGIIKI EMHFLPDVYV PCEVCRGARY NRETLEVKYK
GKSIAEILDM TVDEAVEFFQ AVPRILRKMQ TLQDVGLGYI RLGQPATTLS GGEAQRIKLA
TELSRRSTGK TIYILDEPTT GLHMADVDRL LEVLHRLVDG GDTVLVIEHN LDVIKTADYL
IDLGPEGGSG GGRVVVTGTP EEVAACPTSY TGKFLKKYLS
|
|---|
| |