| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_4590 |
|---|
| Symbol | |
|---|
| ID | 7261619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 4886944 |
|---|
| End bp | 4888677 |
|---|
| Gene Length | 1734 bp |
|---|
| Protein Length | 577 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643564507 |
|---|
| Product | putative sensor with HAMP domain |
|---|
| Protein accession | YP_002461027 |
|---|
| Protein GI | 219670592 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2972] Predicted signal transduction protein with a C-terminal ATPase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGAAAC CCTGGCGTTT ATGGGGCATT CGTACTCAGA TTCTGGTCTT TTACCTTGCA
GCTACCTTGT TTATTGTCGG GGCCATGGGA CTGGCTCTTT TCTTCAGCAC CACCAGGATT
GTGAGCCAGG AAGTGGCCAA GACCACGGCT ACAGCCATCG ATAAAAGCGG CCGTCAATTG
GAAATGTATA TTGATCAATT AAAAGGGCTT TCTGATCTAT TGGCAGAAAG CCCTCAAGTG
CATCGGTACT TCGACCAATC CGGCCCTGAC GATGTGGCCG GTGACGAGCG AAGGGATATC
GAGAGAATGA TTCAAGGGAT GTTGAACACC AATCCCGAGA TTGCCTCCAT CATTCTGATC
GGCGCCAAGG GGCAGCTCAT TACCAACGAG CAGAATTTAG AGATGCATTA TTCAGGGGAT
ATTCAGGATC AGGAATGGTA TCAGGAGGCA CTGGGGAGTA CCATGCCCAT CCTTACCTCG
GCAAGAATGC AGGAATTTTC TATGGACAAG GATAATTGGG TCATTTCCCT GGGGCGGGAG
CTTACAGACG AGAAGAAGAA ACACCTTGGC GTGTTGCGTA TCGATCTCAA ATATGATGCC
ATCGAATCCA TTTTGAAAGA TATGAGTCTG GGCCAAGAGG GCTACTCCTA TATACTTAAT
CAAAGTCAGC AAGTGGTCTA TCATCCCAAT CCGCAGTACT TCAGCCAGGA AGAAAAACGC
TTGGAGCTCA TAGACATGCT GGAGATGGAA GGCAAGGAGC TTTCCCGGGA GTATAAGCTT
ACCCATCGCT ATAACTTAAA CAACAGCGAT TGGGTCTTGG TGGGTGTGGC TTCCCTGGAT
GGGGTCAGGC GCATGGAAGC GGAGATCATC ATCGTGCTGG TTGTCCTCGG CTCAGTCCTC
CTCTTGGCAG CCTTTGGGAG CAGCGCTATC TATGCGAGCA GCGTGGCCCG GCCTATCCGC
CAATTGGAGA AAGCCATGGA AGAGGTGGAA AAGGGGTCGT TGGCTACAGA AGTAGGGGTG
GTAGGGAGTG CTGAGATCGC CAGCCTATCC ACTCATTTTC TCTCCATGCT GGATCGCATT
CGGGAGCTGA TGCAGGAAAT CAGGAATAAG GAACAGTTTT TACGCGCCAG TGAACTAAAG
ACTCTGTATA GTCAGATCAA TCCCCATTTT CTGTACAATA CCTTAGATAC CATTGTCTGG
CTGGCCGAAT TCGGCAATAC AGAGCGGGTT ATCACCGTGA GTAAAGCCAT GGCGCGCTTT
TTCCGGCTAT CCTTGCGTGG AGGCAGCGAA ACCACCACTG TTCGGGATGA ACTGGATCAT
GTACGCCAGT ACTTGTTTAT TCAGAAAGAG CGCTATCAGG ATAAATTGTC CTACGAGATT
CAGGCAGAGG ATGGTTTAAT GGATATAACC ATACCGAAGA TCCTTCTCCA GCCCTTAGTG
GAAAACGCGA TCTATCATGG CCTTCGTAAA ATGCCGGGGG GAGGAATGAT CCGCATCACG
GCCCGAAAAG GGGAGAAGGA GGATCTGTTT TTAGTCGTTG AGGATAATGG CGGGGGATTT
GAGGACGCGG AGAAGGGAAA GGATCCCCTC CGGCTCGGTG GTGTAGGCCT GAAAAATGTG
GCAGAGAGGA TCCGGCTCTA TTATGGAGAA GACTATGGAC TATCTATCGC TAACCGCCCT
GGACAGGGGG CCACGATCAT CCTGCGTTTG AAGACGACGC TGCCTGTTCC TTAA
|
|---|
| Protein sequence | MMKPWRLWGI RTQILVFYLA ATLFIVGAMG LALFFSTTRI VSQEVAKTTA TAIDKSGRQL
EMYIDQLKGL SDLLAESPQV HRYFDQSGPD DVAGDERRDI ERMIQGMLNT NPEIASIILI
GAKGQLITNE QNLEMHYSGD IQDQEWYQEA LGSTMPILTS ARMQEFSMDK DNWVISLGRE
LTDEKKKHLG VLRIDLKYDA IESILKDMSL GQEGYSYILN QSQQVVYHPN PQYFSQEEKR
LELIDMLEME GKELSREYKL THRYNLNNSD WVLVGVASLD GVRRMEAEII IVLVVLGSVL
LLAAFGSSAI YASSVARPIR QLEKAMEEVE KGSLATEVGV VGSAEIASLS THFLSMLDRI
RELMQEIRNK EQFLRASELK TLYSQINPHF LYNTLDTIVW LAEFGNTERV ITVSKAMARF
FRLSLRGGSE TTTVRDELDH VRQYLFIQKE RYQDKLSYEI QAEDGLMDIT IPKILLQPLV
ENAIYHGLRK MPGGGMIRIT ARKGEKEDLF LVVEDNGGGF EDAEKGKDPL RLGGVGLKNV
AERIRLYYGE DYGLSIANRP GQGATIILRL KTTLPVP
|
|---|
| |