Gene Dhaf_3851 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3851 
Symbol 
ID7260872 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp4090355 
End bp4091716 
Gene Length1362 bp 
Protein Length453 aa 
Translation table11 
GC content53% 
IMG OID643563775 
Productsun protein 
Protein accessionYP_002460303 
Protein GI219669868 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0144] tRNA and rRNA cytosine-C5-methylases 
TIGRFAM ID[TIGR00563] ribosomal RNA small subunit methyltransferase RsmB
[TIGR00446] NOL1/NOP2/sun family putative RNA methylase 


Plasmid Coverage information

Num covering plasmid clones58 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATAAAA TAACCTCAAG AGCCTTGGCT GTGCAGATTC TCCGGCGCAT CGAGGAAGAA 
AAAGCCTATG CCAATCTGGT AATGCAAAAA GCTCTGCACG ATTTAAGCGA TCCCCGGGAG
CGCCAATTGG CCACCCTTCT GGTCAATGGG ACGTTAAAAC ACCGTCTGAC TCTGGATTAT
GCTTTAAGGC GCCATCTGCG CAAACCTTTA TCCCAACTGC CCCATGAGGT GCGTTGGATT
CTCAGAATCA GCGCCTTGCA GATTCTCTAC CTTTCCAGGA TTCCCGCAGC TGTGGCCATC
AACGAAGGGG TGGAGTTGAC CAAAAAGCAG CAGGGAAAAT ACACTTCCTT AGTGAACAGT
GTCTTAAGGA GAGTTTTGGA AACCGGTTGG GACATGCTTT GGCCCAGCAA AGAGAAGGAA
CCCGTCCGCT TTCTTTCCCT GCGCTATTCT CACCCGGAGT GGATGGTGAA GCGCTGGTTG
AAACGCTATG GCATGGCGGA TACGGAAGCT TTATGCCAAG CCAATAACGA GCCCGCTCCT
GTGTGGATCC GTACCAATAC CCTGAAGATT TCCCGGGCAG ACTTGCAGGC AAGGCTGGAG
GGGGAAGGAG TAAAGGTGAC GATTGGGGAA CGGGTTCCGG AGAGTTTGGT GATCGAAGAC
TTCGGATCTC TGGATAAACT GCCCAGTTTT CAGGAAGGAC ACTTCACCGT TCAGGATGAA
AGCTCCCAAT TGATTGCTCA TGTCTTAAAT CCTCAAGCCG GGCAAAAGGT GTTGGACGCC
TGCGGCGCCC CGGGAGGGAA AACCACTCAC CTGGCGCAAA GGATGGAGAA TCAGGGAGAA
ATCCTTGCTT TTGATATCCA CCCCCATAAG GTGAAGCTTA TCGAAGATCT GGCCGCCCGT
TTAGGGATTA CCATCATCCG CGCCCAGGCC GGAGATGCCC GGGAGCTGGC GGGAGTAAAG
GATGCTTCCT GTCATAAAGT GTTGGTTGAT GCCCCCTGTT CGGGGTTGGG GGTCCTGCGT
CGCCGGGCGG ATATGCGCTG GCATAAGGAA GAGGATGAAA TAAAAACTTT ACCGGCCTTG
CAATTGGCCA TCCTGGAGCG GGCGGCTCAA TGCGTTGCGG CCGGCGGCGA GCTGGTTTAT
TCGACCTGTA CGATTGAACC TGAGGAGAAT TTCGAAGTGG TGAAGGCTTT TCGTGCCAAT
CATCCGGAAT TCATCACCGT TGATTTCAGC GGGGAACTTC CTTATTCTTT GGCATCAGAA
CAAGACAGGA AACAAGCCGC CAAGGGATTT CTGCAGATTT TGCCCCATAA ACAGGGTATG
GATGGCTTTT TCCTGGCGAA ATTTCGCCGG GTGGAAGTTT AG
 
Protein sequence
MDKITSRALA VQILRRIEEE KAYANLVMQK ALHDLSDPRE RQLATLLVNG TLKHRLTLDY 
ALRRHLRKPL SQLPHEVRWI LRISALQILY LSRIPAAVAI NEGVELTKKQ QGKYTSLVNS
VLRRVLETGW DMLWPSKEKE PVRFLSLRYS HPEWMVKRWL KRYGMADTEA LCQANNEPAP
VWIRTNTLKI SRADLQARLE GEGVKVTIGE RVPESLVIED FGSLDKLPSF QEGHFTVQDE
SSQLIAHVLN PQAGQKVLDA CGAPGGKTTH LAQRMENQGE ILAFDIHPHK VKLIEDLAAR
LGITIIRAQA GDARELAGVK DASCHKVLVD APCSGLGVLR RRADMRWHKE EDEIKTLPAL
QLAILERAAQ CVAAGGELVY STCTIEPEEN FEVVKAFRAN HPEFITVDFS GELPYSLASE
QDRKQAAKGF LQILPHKQGM DGFFLAKFRR VEV