Gene Dhaf_3700 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_3700 
Symbol 
ID7260721 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand- 
Start bp3932245 
End bp3933339 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content52% 
IMG OID643563624 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_002460152 
Protein GI219669717 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000000000251734 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGAGCGTA AGCTGACGAA AACAGTGCGA ATTGGCGATG TAATCATAGG GGGAGGCAGT 
CCCATCGTCG TCCAATCCAT GACCAATACA GATACCCGGG ATATCCCCGC TACCCTGGCT 
CAGATTCAAG CTTTGGCCCG GGCGGGGTGT GAGGTGGTGC GGCTGGCCGT GCTGGATCGG 
GAAGCAGGCT ATGCTCTCGG GGAGATCGCC TTGAAGAGCG AACTGCCTGT TATTGCCGAC 
ATCCATTTTG ATTATCAGCT GGCTTTGCTG GCCATCGAAC AAGGCGTGCA CGGGCTAAGA 
CTGAATCCGG GCAATATCGG TGCCCGCTGG AAGGTGCAAG AGGTGGTCCG GGCTTGCAAA 
GAAAGAGAGA TACCCATACG AATCGGGGTC AATGCCGGCT CATTGGAAAA AGAAATTCTG 
GAAAAATATC AGGGAGTTAC TCCTGAAGGC ATGGTGGAAA GTGCTTTAGG GCATATCCAC 
TTACTTGAAG AAGAAGGTTA TGATAAAATC AAAGTCTCTT TAAAAGCTTC CCATGTTCCG 
CTGATGCTGG CGGCTTACCG CAAGATGTCG GCAAGGGTGG ATTACCCCCT CCATATAGGA 
GTCACTGAGG CAGGAACGGT ACGTTCCGGA GTGGTAAAAT CTGCGGTAGG TATCGGCAGT 
CTCTTAGCCG AAGGGATAGG AGATACCCTG CGCGTATCTC TCACCGGAGA TCCTGTTCAG 
GAGATTCCTG TAGCCCTGGA AATTTTAAAA GTTCTCGGGT TAAGGAACCG GGGAGTGGAG 
CTGATCAGCT GCCCTACCTG CGGCCGCACT CAGGTGAATC TGGCTGAACT GGCAGAGAAG 
GTGGAGGACA AGCTTTCCCA TCTGCCCCCT TTGGATCGGC CCTTGAAAGT TGCCGTGATG 
GGCTGCGCAG TCAACGGACC TGGAGAAGCC CGGGAAGCAG ATTTTGGTAT TGCCGGTGGC 
AAAGGCATGG GCTTGCTCTT TAAAAAAGGG GAGATTGTCG CCCGTTTATC GGAAGAAGAA 
CTATTGCCCG CTTTACTTGC GGAAATTGAA AATTATGTGA AACAGTATGG AAGGGAGCAG 
CATTCATGCG TGTAA
 
Protein sequence
MERKLTKTVR IGDVIIGGGS PIVVQSMTNT DTRDIPATLA QIQALARAGC EVVRLAVLDR 
EAGYALGEIA LKSELPVIAD IHFDYQLALL AIEQGVHGLR LNPGNIGARW KVQEVVRACK 
EREIPIRIGV NAGSLEKEIL EKYQGVTPEG MVESALGHIH LLEEEGYDKI KVSLKASHVP 
LMLAAYRKMS ARVDYPLHIG VTEAGTVRSG VVKSAVGIGS LLAEGIGDTL RVSLTGDPVQ 
EIPVALEILK VLGLRNRGVE LISCPTCGRT QVNLAELAEK VEDKLSHLPP LDRPLKVAVM 
GCAVNGPGEA READFGIAGG KGMGLLFKKG EIVARLSEEE LLPALLAEIE NYVKQYGREQ 
HSCV