| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_3411 |
|---|
| Symbol | |
|---|
| ID | 7260429 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | - |
|---|
| Start bp | 3647350 |
|---|
| End bp | 3648117 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 643563334 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_002459865 |
|---|
| Protein GI | 219669430 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAGAA ATAATGAACG GGGTAGGCCA AGGCAGGAAG AACGTTTGCA AAAGGTCTTG
GCCCAGGCCG GGATCGCCTC CCGCCGGCAT GCTGAAGAGA TCATCCTCCA GGGGAGGGTT
AAAGTTAACG GAGAAGTCAT CCGGACCTTG GGAACTAAGG TCGTGTCCAC GGATCGGATC
GTCGTGGACG GCCGGCTCCT TTCCATTCCT CAGAATGACT ATGCCTATTA TCTATTGCAC
AAACCCACCG GGTATATCAC CAGTGTTACC GATCCCCAAG GCAGAAAAAC CGTGATGGAA
CTCATGCCAA AAATCCCCCG GAGAGTCTAT CCGGTGGGCC GCTTGGATTA TGATACCTCA
GGACTGCTTC TTCTCACCAA CGATGGGGAT TTAGCCCACC GTTTAATGCA TCCTTCCTAT
GGTGTGGAAA AGACCTACCG GGTAGAGGTG GGGGAGAAGA TACCGGAACA AGCCTTAAAG
CGTTTGGAAA AAGGAGTTCT TCTGGAAGAT GGCAAAACAG CCCCAGCCCG TATCAGAGAA
GTTTCTCCAA AGGGCCGGGG CTCTCTGCCA ACCTATGAGA TTACCATTCA TGAGGGGCGG
AATCGTCAGG TACGACGAAT GTTTAAAGCC GTAGGTTTTC CATTAAGCAC CTTAAAGCGG
CTGCGTTTTG GCCCCTTGGA GTTGGACCCG TCTCTGGCAC CGGGGGCATT CCGCACCCTG
TCCAAAACGG AAATCCAACA TTTGCGCCGG GCGGTAAAGC TTACTTAG
|
|---|
| Protein sequence | MNRNNERGRP RQEERLQKVL AQAGIASRRH AEEIILQGRV KVNGEVIRTL GTKVVSTDRI
VVDGRLLSIP QNDYAYYLLH KPTGYITSVT DPQGRKTVME LMPKIPRRVY PVGRLDYDTS
GLLLLTNDGD LAHRLMHPSY GVEKTYRVEV GEKIPEQALK RLEKGVLLED GKTAPARIRE
VSPKGRGSLP TYEITIHEGR NRQVRRMFKA VGFPLSTLKR LRFGPLELDP SLAPGAFRTL
SKTEIQHLRR AVKLT
|
|---|
| |