Gene Dhaf_2832 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_2832 
Symbol 
ID7259840 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp3043677 
End bp3047855 
Gene Length4179 bp 
Protein Length1392 aa 
Translation table11 
GC content53% 
IMG OID643562751 
Productrecombination helicase AddA 
Protein accessionYP_002459292 
Protein GI219668857 
COG category[L] Replication, recombination and repair 
COG ID[COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) 
TIGRFAM ID[TIGR02785] recombination helicase AddA, Firmicutes type
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATAATC CCAAATGGAC CCCGGCCCAG CAGGCGGCCA TTGACTTGAA GGGGCAGCTT 
CTCGTAGCGG CGGCTGCCGG TTCGGGTAAG ACCGCAGTTC TTGTCCAAAG GCTCTTCAAG
CAGATTACGG ATGTGGATGA GCAAGTGGAT GTGGATCGGT TTCTGGTGGT GACCTTTACG
AAAGCGGCCG CCGCAGAAAT GCGGGAACGC ATCGGGAAAG CTCTGGATGA AGCGCTCTTT
GGGGCGGCGG AGCCTGCTCA GGTGGAACAC CTCCTGCAAC AGAGGGCCTT GCTTTATCGG
GCCAGTATCA CCACCCTGCA CTCATTTTGT ATGGAACTGA TTCGTCAGTA TTTTTACCTT
ATTGAGCTGG ACCCGGCTTT TCGCGTAGCC GATGAAGCGG AAGCGGACCT GCTTCGCCAG
GATACTCTTG AAGATTTGTT TGAAGCGTAT TACGGGGAGG AGACACCGGC CTTTCAAAGC
CTGGTCGATG CCTTCGGCAC CGATCGTGAT GATCAGCCTT TGATGGCCTC CATTCTTAGG
CTTCACGAAT TTGCCATGAG CCAGGTCCAT CCTGGGGAGT GGCTGGAACA CCTGCCGGCA
GCGTATGATT GGCACAGCCT TGATGACCTG ATGGAAAGCC CCTGGGGGCA GGTGGTCCGG
CAGGGGGTTC GGGATAAAGT GGAGGAAGGT CTTATCCTCC TGGAGCGGGC CTATCGGCTG
GCCGAGTTGC CGGGAGGTCC TGTTCATTAT CTGCCTGTTC TGGAAGACGA TCAATCCAGG
TTGGGTTTTC TGCGGGAAAT GGCGGAGAAG GGGACTTGGA GTGACATCGA GACGGCCTTT
AAGTCAGCGG CAGCCTTTCC CGGCCTCCCC CGGGGAAGCA AAAAAAATCT GCCGGACTCC
TTGATTGATG AGGAAAACAG CAAGCGCTTG CGGGAAGAAA GTAAAAAAGC CCGTGATGAG
GCCAAAAAGA AGCTGGAAGA AATCAAGAAT ACGGTGTTTT CAGTACCCCT GACCGATCAG
CTCCCGTTCC TGAACAAGAT GGGGGAATTG GTCGGCACTC TGGCTCAGGT CACCCAACAC
TTTGCCCGGG AGTATCAAAA AGCCAAGCGG CAAAGGAATT GCGTGGATTT TTCCGATCTG
GAACACTATG CCTTACAGCT CCTGGCCAAG GATAAACAGC CTACGGAAAT TGCCTTAAAA
CTCCAGGCCT ACTATGCGGA AGTTCTGGTG GATGAATATC AGGACATCAA TCCCGTTCAG
GAGCGTATTT TGCAGCTGGT TTCCCGTCAA GAGGAGGGGA AGGCCAATCT GTTCATGGTA
GGGGATGTCA AGCAGAGCAT TTATCGTTTC CGGATGGCCG ATCCCGGACT TTTTCTGCGC
AAGTATGGGG AGTTTCCTCA TTATCAGGAA GGGGGGGGAG CTGCCCCTAA TTTGGTCATT
GACCTCAACC AAAATTTCCG CAGCCGCCCT GAAGTGATCC AAGGGATCAA TTATCTTTTC
TATCAGATCA TGACGGAGGG AGCAGGGGAG ATCGTCTATG ATGAGCAGGC TGCCCTGAGA
CCGGGAGCTA AATTTGTCTC CGATGGGGAG CTTAGAACCG CTGAAGGCCC CATTGAAGTT
CATTTATTTG ATCCTAAGGC CATCGATCTT TCCCTGGGTC AGAAAAGAGG AGCTGAAGAT
GCAGCCACGG AAGTGGATTC ACCGGCTAAG GGTGAGGGTG AGGAATTTGA GCAGAATCGG
GAGCCGGAAT CAGGCGATGA TGAATCATCA CTGGAAGAGG CGGAAACAGC CCGTATTGAA
GCCCGTTTAG TGGCAGCCCG CATTCAAAAA ATGGTTCTGG AGAGGGAATT TCAGATTCAT
GATAAGGAAC TGGGCGATTA TCGGCCGGTA CAGTATGCGG ATATCGTGAT TCTTATGCGC
TCCCTGGCCT CGGTAGCCTC TGTGTATGCC GAAGAGTTCC AGAAGGCGGG AATCCCTGTC
TATGCAGAAA CCAACAGCGG TTACTTTGGA ACCAATGAGG TGGACACAGT CTTATCCTTG
CTCAAAATCA TCGATAACCC ACGTCTGGAT ATTCCCTTTG CGGCAGTGCT CCGTTCTCCT
CTGGTAGGGA TGAATGGAAC GGAGTTAGGG AAATTGCGCT CGCTGCTTCC CCAAGGAGAT
TTTTACGAAA CCCTGGTCCT GACCTTTTGG GCAGGTGATG CTCACCGACA AGAAGAGGGG
CATGAATTTT ACTCAGAAAT CAGGGAGATT TTAGGCAAGC ACTGGGAGAG CTTACCGCAA
CTGGAGGTTA AAGTCAGGCA TATCCTGGAG ACATCACCCG AGATCAAAGA GAAGGTGGAT
GCCTTTTTCC CCAAGCTGCA GGAGTGGCGG CACCGTTCCC GGCGGACCTC TCTGGCCGAT
TTGCTGTGGC ATCTCTACGA AGATACCGGA TATCTGGCTT ATGTAGGAAC CTTGCCTGCC
GGTGCACAAC GTCAAGCGAA TTTACGAGTT CTCTATGATC GGGCCTGCCG TTACGAAGCG
ACAAATTATC GGGGCTTATT CCGTTTCCTG CGTTTCCTGG AGAAATTTCA AAGCCAGGGC
AAGGATCTGG GCAATGCCAG CATAGTGGGG GAAAAAGAGA ACGTGGTCCG CTTCATAACC
GTGCATTCCA GTAAAGGGCT GGAATTCCCG GTCGTCTTCA TAGCCGGGTT AGGGAAGAAA
TTTAATACCC GCAGCCTCAG CAGTCAGCTC TTGCTTCACT CACACTTAGG GGTGGGCATT
CCTTTAATAG ATATAGAGAA TCAGGTTCGT TACCCATCTG TTATTCAATA TGCCGTGAAA
GAGCGTCTAT GGCAGGAAGC CCTTGCCGAA GAGCTGCGGA TCCTTTATGT AGCCCTTACC
CGGGGCAAGG AGCGTCTCTT CCTCTTTGGG CATCAGCATA AGCTTGCGGA GGCTATCAAC
AAATGGCGGA GCTTAGCCCT GTCCTGCCCC GACACGGCCT TTCCCGACGG TCAGCTGCGG
GGGGCCAAGA CCTACCTGGA TTGGCTCGGG CCGGCTTTAG TACGTCATCC TGAGGATTTG
TTCAAACTCG GCTCTTTCCC CACAGCCAGT GAACTTCCTG ATAGCTCATC CCAGTGGAAA
GTGATCCTTC ATGATCAGAT CGCCGGCAAG GGACCTGTTC AAGAGGCAAC CAGCTCTCAA
GATGAAATCA TTCTCCCAGA TCAAGAAACC CTTGGAGAAA GAGAAGCTTC TGAGGAAACG
GAAATTCCCG GAGAAACGGA AGCCTCGGGA AAAACGGAAA TCCCTGGAGA AACAAAAAAC
TCTGAAGAAA CGAAAACCTC TGAGGATAAG AAAAACCTTG AAGCCCAAAC GCCTGAAACG
GCGGACTTGG ATACTAAAAA TTTACAGGAG GAAGTTTTCC GGCAGCTTAA CTGGCAGTAT
CCTTACCCTG AAGGGGTCAA TCAATCCGCT AAGACCAGTG TCAGTGAATT GAAACGGCAG
TCATTATGGT ACATGGATAA TGAATACTCG TCTCCATCTT CATCCTCATC TTCATCTCCG
TCCGCCTTGT CCGCGCCCAG TTTTCTGCGC CCTCAATTCA TTGTGTCCCG GAAGGAATTG
ACGCCTGCGG AACGAGGCAC AGCAGTGCAT GCCGCCATTC AGCATTTACC CTTGGCCCTA
TGGCGGGATA CTTGGGAGGA GCTGGCTCAG GAAGTCCGCG AAAGCATGCT TCAAGAGCAT
ATCGACTCCT TGATCCGGCG GGAGATTCTC AGTGCAGAGC AGGGGGGAGC GGTATCCGTT
TCCCAGCTAA AGAATCTGCT GGACTCCACC AGCGGCAAAC GTCTCTGGGA AGCTGAAGAA
GTGCGGAGAG AAGTTCCCTT TACCCTCTCC TTGCGTCTCA GGGCCCAAAA AGAACCGGTG
CTTGTACAGG GCATCATCGA TGCAGTGCTG CTCTCTCATC AGGAGCATGA GGCCCAGGTT
ATGGATTTTA AGACTGATAA TTTAGCAGGG GTGCCCGACC CGGAGCTGGT TTTAACCCAG
CGCTACGGAC TCCAGCTGGG GCTGTATGCC CTGGCGGTGG AAAGGCTGCT CAAGGTCCCT
GTCCGGGAAT GCATCATCTA TGCAACCTCC CTTAATCGTG AGTTTGTTAT GCAGAGAGAG
GCTGTTCAAG CTGCTCTGGA GTCGGTGGTT ATAGTGTAG
 
Protein sequence
MNNPKWTPAQ QAAIDLKGQL LVAAAAGSGK TAVLVQRLFK QITDVDEQVD VDRFLVVTFT 
KAAAAEMRER IGKALDEALF GAAEPAQVEH LLQQRALLYR ASITTLHSFC MELIRQYFYL
IELDPAFRVA DEAEADLLRQ DTLEDLFEAY YGEETPAFQS LVDAFGTDRD DQPLMASILR
LHEFAMSQVH PGEWLEHLPA AYDWHSLDDL MESPWGQVVR QGVRDKVEEG LILLERAYRL
AELPGGPVHY LPVLEDDQSR LGFLREMAEK GTWSDIETAF KSAAAFPGLP RGSKKNLPDS
LIDEENSKRL REESKKARDE AKKKLEEIKN TVFSVPLTDQ LPFLNKMGEL VGTLAQVTQH
FAREYQKAKR QRNCVDFSDL EHYALQLLAK DKQPTEIALK LQAYYAEVLV DEYQDINPVQ
ERILQLVSRQ EEGKANLFMV GDVKQSIYRF RMADPGLFLR KYGEFPHYQE GGGAAPNLVI
DLNQNFRSRP EVIQGINYLF YQIMTEGAGE IVYDEQAALR PGAKFVSDGE LRTAEGPIEV
HLFDPKAIDL SLGQKRGAED AATEVDSPAK GEGEEFEQNR EPESGDDESS LEEAETARIE
ARLVAARIQK MVLEREFQIH DKELGDYRPV QYADIVILMR SLASVASVYA EEFQKAGIPV
YAETNSGYFG TNEVDTVLSL LKIIDNPRLD IPFAAVLRSP LVGMNGTELG KLRSLLPQGD
FYETLVLTFW AGDAHRQEEG HEFYSEIREI LGKHWESLPQ LEVKVRHILE TSPEIKEKVD
AFFPKLQEWR HRSRRTSLAD LLWHLYEDTG YLAYVGTLPA GAQRQANLRV LYDRACRYEA
TNYRGLFRFL RFLEKFQSQG KDLGNASIVG EKENVVRFIT VHSSKGLEFP VVFIAGLGKK
FNTRSLSSQL LLHSHLGVGI PLIDIENQVR YPSVIQYAVK ERLWQEALAE ELRILYVALT
RGKERLFLFG HQHKLAEAIN KWRSLALSCP DTAFPDGQLR GAKTYLDWLG PALVRHPEDL
FKLGSFPTAS ELPDSSSQWK VILHDQIAGK GPVQEATSSQ DEIILPDQET LGEREASEET
EIPGETEASG KTEIPGETKN SEETKTSEDK KNLEAQTPET ADLDTKNLQE EVFRQLNWQY
PYPEGVNQSA KTSVSELKRQ SLWYMDNEYS SPSSSSSSSP SALSAPSFLR PQFIVSRKEL
TPAERGTAVH AAIQHLPLAL WRDTWEELAQ EVRESMLQEH IDSLIRREIL SAEQGGAVSV
SQLKNLLDST SGKRLWEAEE VRREVPFTLS LRLRAQKEPV LVQGIIDAVL LSHQEHEAQV
MDFKTDNLAG VPDPELVLTQ RYGLQLGLYA LAVERLLKVP VRECIIYATS LNREFVMQRE
AVQAALESVV IV