| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1583 |
|---|
| Symbol | |
|---|
| ID | 7258552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 1691702 |
|---|
| End bp | 1693042 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 643561489 |
|---|
| Product | RNA methyltransferase, TrmA family |
|---|
| Protein accession | YP_002458069 |
|---|
| Protein GI | 219667634 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
|---|
| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000000730131 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAGCAAAA ACTCAATGGA TACAAAACCT ATGGTTAAGA AATCGGCCGA TACCCATCGT
CCGATTACTA TAGAATGTCT GCGCCTTTCT TCAGATGGCT CCGGGGTGGG ATATCATGAA
GGAAAAGCTA CCTTCGTTTC CGGATTACTG CCGGGGGAGA CAGGGCAGAT TCGCATCGTG
GAAGAGAAAA AGAACTGGCA AAGAGGTCAA CTGCTGAGCC TCTGCAAAAC CTCGGCAGAG
CGAATCGAAC CACCCTGTTC GGTGTTCGGC CGATGCGGCG GTTGTCAGCT GCAGCACCTC
AATTATGCCC AGACCCTGCT CTGGAAAAAG CGCTGGGTAG AAGATGCTCT GACCAGGATT
GGCAAAATCC CTCTGGAAAA AGTCAAAGTC CATCCAACCT TGGGTATGGA TGAACCCTGG
CGTTACCGGA ACAAAGCGCG GCTTCATCGC GGAGAGGGGA ATACGCTTGG CTATTATCAG
GAAAAAAGCA AAGCGACAGT TCCCTTCACC GATTGCCTTC TGATCAGTGA ATCGATGAAC
CGGTGGGTCC GGGAAGCCGA GGCAATTCTT GGCCAACAGG ATAAAAATCT CTTTCCTGAC
CTGAACGCGC TGACCTTCCG GGAAAATTCC CAGGGGGAAG GGATGTTGAT TCTGGACTCT
TTGAAGGATG TCCGACAGGC TGATGTATGG TCAGAGATGG GCGGGGGAAC CCACTCGGTT
TGGGGTATCA ACAGTTCGGG TGAGCCGGAG CGAATCGCTG GTCAAAAAGA ATTTACCGAG
GATGTGCTGG GGGCTAGGTT TAAGATCTCC CCGCTGGCCT TCCTGCAGGT GAACCCGGTT
CAAACCCGTA AACTTTACAA CAAAGTGCTG GACTGGGCGG AACTTTCCAC CGAGAAAGTG
GTCTGGGATC TTTACTGCGG AATCGGAACC ATTACCCTGG CTTTAGCTGC CAAGGCCAAA
AAGGTCTGGG GAATTGAAGA AAACCCCTAT GCCGTGGAAG ATGCCAGGGA AAATGCCAAG
CGCAACAGAG TGAATAATGT GGAGTTTATG GTCGGCAAAG CGGAGGACAC CTTTCAGCAG
ATCGGAGACT ATCCCCATAT CGTAGTCCTT GATCCGCCCC GGGCCGGAGC CCACCGGAAA
GTGCTGGAGG GATTGCTGGA GCTAAAGCCA GAGCAGATCA TTTATGTTTC CTGTGATGCG
GGGACTTTGG CCCGGGATCT GGGGATACTG CAGAACGGTG GGTATAGGGT GGTAGAGGTA
CAGCCGGTGG ATATGTTTCC CTGGACAGTG AGTGTGGAGA GCATAATAGT GATGACGTAT
AGTGGTCAAA AGGGCAAATA A
|
|---|
| Protein sequence | MSKNSMDTKP MVKKSADTHR PITIECLRLS SDGSGVGYHE GKATFVSGLL PGETGQIRIV
EEKKNWQRGQ LLSLCKTSAE RIEPPCSVFG RCGGCQLQHL NYAQTLLWKK RWVEDALTRI
GKIPLEKVKV HPTLGMDEPW RYRNKARLHR GEGNTLGYYQ EKSKATVPFT DCLLISESMN
RWVREAEAIL GQQDKNLFPD LNALTFRENS QGEGMLILDS LKDVRQADVW SEMGGGTHSV
WGINSSGEPE RIAGQKEFTE DVLGARFKIS PLAFLQVNPV QTRKLYNKVL DWAELSTEKV
VWDLYCGIGT ITLALAAKAK KVWGIEENPY AVEDARENAK RNRVNNVEFM VGKAEDTFQQ
IGDYPHIVVL DPPRAGAHRK VLEGLLELKP EQIIYVSCDA GTLARDLGIL QNGGYRVVEV
QPVDMFPWTV SVESIIVMTY SGQKGK
|
|---|
| |