| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1517 |
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| Symbol | |
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| ID | 7258486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 1615305 |
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| End bp | 1617284 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 643561425 |
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| Product | DNA ligase, NAD-dependent |
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| Protein accession | YP_002458005 |
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| Protein GI | 219667570 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000000611736 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGATG TGTCACAAAG AATCGAGGCC TTACGTGAAC AAATCGAGGA AGCCAATTAT
CAATATTATG GCTTGGATCA GCCGACCTTA AGTGATGCAG AGTATGACGC ACTCCTGCAG
GAATTGATTC GCCTGGAGAA AGAACATCCG GAATTCCTGA CTCCCGATTC CCCGTCCCAA
CGGGTCGGCG GCTATATCGC CAAGGAATTC CCTAAAGTTC GTCATGCTGA AGCCCTCCTT
AGTTTGGATA ATGCTTTTGA TGCCGGAGAT CTTCTGGAAT TTGACCGCCG GGTCCGTTCG
ATGGTTGCCG AAGTGGAGTA TGTGGTGGAG CTTAAGATCG ACGGCTTAAC CGTTGCTTTA
ACTTATGAAG ATGGAGCGCT GGTGCGCGGC GCTACTCGTG GCGACGGTGA AGTGGGTGAA
GAAATTACCG CCAATCTGAA GACCATACCC GCTATTCCCT TGCGGCTGCG TAAGCAGGCC
GACCGCCTGG ATGTGCGGGG AGAAGGTTAT ATGCCTAAAG GTTCCTTTTT GCGCCTGAAT
CAGGAACGGG AAGAGGCTGG ACAGCCTCTC TTTGCCAATC CCCGGAATGC GGCGGCCGGT
TCTTTGCGCC AGCTTGACTC CAGGATTACG GCCCAGCGCA AATTAGGGTA TTTTGCTTAT
CAGGTCCTGA CTCCTGAAGA GGGAGAGCTG GCTTCCCAGA CTGCCGTACT GGATTATCTT
AAGGAGCAGG GGTTCTCGGT TAACCCTGAA TATCGGGTCT TTTCCGCCAT AGAAGAGGTT
ATTGCTTATT GCGGGGAAAT GGTAGAGAAA CGCCATAACT ATCCTTATGA TATTGACGGA
CTGGTGATTA AGGTCAATGA TATCGCTCAG CAGCGGGAAC TGGGCTTTAC GGCCAAAAGT
CCTCGTTGGG CCATCGCTTA TAAATTTCCG GCGGAGCAGG TGGAAACTGT TGTGGAGGAC
ATTGTGATTC GGGTAGGGCG GACAGGAGTG CTGACTCCCA CAGCTTATTT GACTCCGGTC
TTTGTGGCCG GCTCCACCGT GGGCCGGGCT ACTCTTCATA ACCTGGATAA TATCCGCGCC
AAGGATGTTC GCATCGGGGA TCATGTTTTG ATCCAAAAGG CTGGAGATGT CATCCCTGAA
GTAGTGAAAA TCCTGCCGGA GAAAAGGACA GGTGGGGAGC GGATCTTTGA GATGCCCGAG
CTCTGCCCTG AGTGCCAGAG TCCGGTCATC CGGGAAGAAG GGGAAGCAGC CCACCGCTGT
ACCAGCATCA CCTGTCCGGC CCGGCAGCGG GAAGCCATTA TTCATTTTGT GTCCCGGAAT
GCCATGAATA TTGATGGACT GGGACCGGCG GTTATTTATC AGCTTTTGGA AGCCGGACTG
ATTAAGGATG CCGCCGATCT CTATGCTTTG GAATATGATG CCCTGGTTCC ATTGGAGCGG
CTGGGTAAAA AATCTGCCGA GAATCTGCTC AAAGCTATCG AAGACAGCAA GGAACGAGGA
TTGGCTCCGC TTATCTTTGG TCTGGGAATC CGCCATGTGG GAGAAAAAGC CGGCAAGATC
CTAGCCCAAA AATACGGAAC CATGGAAGAC CTGGAGAAAG CTCAGGTGGA GGAATTGCAG
GAGATCCCGG ATGTGGGCCC CGCTATGGCC CAAAGTGTCG CTCAGTTCTT CCAGCAGGAA
AGCACCCACC ACTTTCTGAA TAAACTGCGC CAGGCAGGAG TAGTGATGAG TGCGCAGCAT
TCTGCCAAAC CTCAGATTTT TGCGGGGAAA AGCATTGTGG TGACAGGATC TTTGCAACGC
TGGGATCGCC ACTATGTAGA GACCATGATC GAAGAGTTTG GGGGCAAGGC TGCCAGCAGC
GTCAGCAAGA AAACCGCCTT TGTGGTCGCC GGGGAGAAGG CCGGTTCCAA GCTCGCCAAG
GCTAAGGAAC TGGGAATTCC GGTTTTAAGC GAAGAGGAAT TTGCGGAACT TTTGCCCTGA
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| Protein sequence | MSDVSQRIEA LREQIEEANY QYYGLDQPTL SDAEYDALLQ ELIRLEKEHP EFLTPDSPSQ
RVGGYIAKEF PKVRHAEALL SLDNAFDAGD LLEFDRRVRS MVAEVEYVVE LKIDGLTVAL
TYEDGALVRG ATRGDGEVGE EITANLKTIP AIPLRLRKQA DRLDVRGEGY MPKGSFLRLN
QEREEAGQPL FANPRNAAAG SLRQLDSRIT AQRKLGYFAY QVLTPEEGEL ASQTAVLDYL
KEQGFSVNPE YRVFSAIEEV IAYCGEMVEK RHNYPYDIDG LVIKVNDIAQ QRELGFTAKS
PRWAIAYKFP AEQVETVVED IVIRVGRTGV LTPTAYLTPV FVAGSTVGRA TLHNLDNIRA
KDVRIGDHVL IQKAGDVIPE VVKILPEKRT GGERIFEMPE LCPECQSPVI REEGEAAHRC
TSITCPARQR EAIIHFVSRN AMNIDGLGPA VIYQLLEAGL IKDAADLYAL EYDALVPLER
LGKKSAENLL KAIEDSKERG LAPLIFGLGI RHVGEKAGKI LAQKYGTMED LEKAQVEELQ
EIPDVGPAMA QSVAQFFQQE STHHFLNKLR QAGVVMSAQH SAKPQIFAGK SIVVTGSLQR
WDRHYVETMI EEFGGKAASS VSKKTAFVVA GEKAGSKLAK AKELGIPVLS EEEFAELLP
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