Gene Dhaf_1326 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDhaf_1326 
Symbol 
ID7258296 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfitobacterium hafniense DCB-2 
KingdomBacteria 
Replicon accessionNC_011830 
Strand
Start bp1432426 
End bp1434048 
Gene Length1623 bp 
Protein Length540 aa 
Translation table11 
GC content47% 
IMG OID643561238 
Productputative sigma54 specific transcriptional regulator 
Protein accessionYP_002457818 
Protein GI219667383 
COG category[T] Signal transduction mechanisms
[K] Transcription 
COG ID[COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.01296e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATCAC CGGAATTTAT TGTACGCATT GATTTTGTCG ATCGCCCCGG TTTAGGTTAT 
GACATATTTC AGCGCTTTGA AGATCATAAC GCTGATAAAA TCGTCATGGA AGTCTCTCAT
GGGCAGCAAA TGATGATTAA ATTTCGTTCT CCTGATCAGG AGGGATCGGA GACTCTCATC
CGGGACCTCC TTACCGTTCA GGGTGTCGTA TCAGTAACTC TTGTTGATTA CATGCCTTAT
GAACGGCGGG AGCAGGAATT AAAAACGATT CTCGACTTAG TAAGCGAAGG AATCATCGCC
GTCAATACAA ACCATAAAGT GACTCATATT AATGAAGTTG CGGCACAAAT TTTTCATACG
ACCCCGGAGG AGGCTTTGAA CCAAGATGCG GAACTCTTAT TTGAAGCAGA TGCTCCAATT
TTCGAAACCT TAAAAACAGG AATTCCTTAT AGCTTAAAAG AGCGCAAGAT TCGAAAAAAC
CAGAAGCTCA TACACTTTTT GACAAGTGGT GTCCCCATCC TCAATAAGCG AGGACAAATC
ATTGGGGGAG TCATGACCAT CAAAGATTTT CGTCAAGTGG AAGAACTCCT CTCCAAGGTT
GAACGTAAGC CTCAGTCTAT AAACTTTGAT AGTATCATCT ATGAGAGCCG GCGTATGCGG
GATCTCATTG AGACCGCCAA AACAGTAGCC CGGGGAACCT CCACCATACT CCTGCGGGGA
GAAAGCGGCA CAGGAAAGGA ACTGTTCGCC AAAGCTATTC ATGCCGAAAG TCCGCGTTCC
CGACAAGCCT TCATTCCTAT TAATTGTGCG GCTTTACCGG ATACCTTGTT GGAGAGTGAA
CTCTTTGGTT ACGAGGAAGG CTCTTTTACC GGAGCAACTA AAGGAGGGAA GAAAGGGCTT
TTCGAGCAGG CTCACGGGGG CACCCTTTTC CTTGATGAGA TCGGGGAAAT CACGCCTCAG
GTTCAGGTGC GCTTGCTTAG AGTACTGCAG GAAGGAACGA TTCGCCGTAT CGGAGGTTCG
AAAGAGATCC CTGTGGATGT ACGAATCATT GCCGCCACTC ACCGCAATCT CGAAGAGTTG
ATTGATAAAG GACAGTTCAG GGAGGATCTT TATTATCGCC TCAATGTGAT TCCCCTGCAT
ATTCCCTCAT TGCGGGAGAG ACCTGAAGAT ATCCCTTTGA TCGCCCAAGT CTTAACCCGA
AAGATTGCCA GAAAGCTTGG CAAATCCGAA GTGCACCTTA CCAAGGAAAG CGCGGACCTG
CTCAGGGCTC AAAAATGGCC CGGCAATGTT CGTCAACTGG AGAATCTCCT GGAGAGAATT
ATTAATTTAA ATTCGAACTC AGAGATCAAG CCCGATTCTT TCTATGAGTG GGGGGATTTG
ACACCGGCGC TTCCTGTGTC TGAATCGGAA AACACAGCTC ATCAACTTAT CATTCCTTTT
GGCGAACCCT GGCCTCCCCT TAAAGACATT GTTGCTCAAG TGGAACGTCA AGTTTTACTT
AAGGTGCTGG CGGAACATCC CTCTTCGCGT AAGGCGGGTA AAATACTGGG CGTCTCCAAT
ACAACAATTT TAAACAAAAT GAATTCCTAT GGACTTGGCA AGATGGATGA ACCCGAGGGA
TAA
 
Protein sequence
MESPEFIVRI DFVDRPGLGY DIFQRFEDHN ADKIVMEVSH GQQMMIKFRS PDQEGSETLI 
RDLLTVQGVV SVTLVDYMPY ERREQELKTI LDLVSEGIIA VNTNHKVTHI NEVAAQIFHT
TPEEALNQDA ELLFEADAPI FETLKTGIPY SLKERKIRKN QKLIHFLTSG VPILNKRGQI
IGGVMTIKDF RQVEELLSKV ERKPQSINFD SIIYESRRMR DLIETAKTVA RGTSTILLRG
ESGTGKELFA KAIHAESPRS RQAFIPINCA ALPDTLLESE LFGYEEGSFT GATKGGKKGL
FEQAHGGTLF LDEIGEITPQ VQVRLLRVLQ EGTIRRIGGS KEIPVDVRII AATHRNLEEL
IDKGQFREDL YYRLNVIPLH IPSLRERPED IPLIAQVLTR KIARKLGKSE VHLTKESADL
LRAQKWPGNV RQLENLLERI INLNSNSEIK PDSFYEWGDL TPALPVSESE NTAHQLIIPF
GEPWPPLKDI VAQVERQVLL KVLAEHPSSR KAGKILGVSN TTILNKMNSY GLGKMDEPEG