| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_1271 |
|---|
| Symbol | |
|---|
| ID | 7258241 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfitobacterium hafniense DCB-2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011830 |
|---|
| Strand | + |
|---|
| Start bp | 1367759 |
|---|
| End bp | 1369360 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 643561184 |
|---|
| Product | extracellular solute-binding protein family 5 |
|---|
| Protein accession | YP_002457764 |
|---|
| Protein GI | 219667329 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000259985 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGGT ATAATAAAAA GTGGACAGTT TTAGGTATGC TGATCATGAG TCTAGCCCTT
GTTCTGGCAG GTTGCGGCGG AAGCAATGCA GCGGTTACCA AAGAAAAGAC CAACAAAGAT
GAACTGGTTA TTTATATAGG GTATGGAATG ACCAGCGGCG GTTATGATCC CTGCACCGGG
TACGGCATCT ACGGGGACGG AATTTTTCAT AGCAACCTGC TGAAATTCAA TGCCCAAATC
GAAGCAGAGC CTGATTTGGC TGTCGGCTAT ACAGTCAGTG ACGATGGCTT AACCTATACA
TATACTCTTC GCGATGATGT GAAATTCTCC GATGGAGAAC CTTTGACTGC CGATGATGTG
GCCTTTACCT ATATGACCGC CAAAGCAAGC GGTTCCAGCG TGGATTTGAC AATGCTGGAA
AAAGCCGAAG CTAAAGATAA AGTTACCGTT GTCTTTACCC TGAATAAGAA ATGGTCGGCC
TTTGCCTCCA CCACAGCCCT GCTGGGCATT GTTCCGGAGC ATGCTTACGG GCCGGGTTAC
GGGGACAATC CCATCGGGAC AGGCCCCTTT AAGGTAGCTC AATTGGATAA AGAGCAGCAG
CTCATCGTCG TCCCCAATGA TTATTACTAT GGAACCAAGC CCGCCTTTAA AAAGATCACC
ATTCTGAACC TGGATGAGGA GGCCGCCTTA GCGGCAGCCA AATCAGGAAA TCTGGATGTG
GTCATGGTCA ATCCTGAATA TGCCTACGAA GAAGTTCCGG GTATGAGCAT GGCGAGGATT
AAGACTGTGG ATAATCGGGG ATTTAATTTG CCCGTCATAG GGGAGACCAA GGATGGCAAG
GGCAATGTGA TCGGCAACAA TGTCACCAGT GATTATGCTG TGCGCAAGGC CTTAAACATT
GGCATTGACC GGGAAACTAT TATCCAAAAC GCTCTTAACG GGATCGGAAC CCCTGCCTAC
GGCCGGGTGG ATGCTTTGCC CTGGAACAAC ACTCCTGAAT TCGAAGATGG CCGGGTGGAA
GAAGCAAAAG CTCTCTTGGC AGAAGCGGGC TGGATCGATA CTGATGGAGA CGGCATTCGG
GAGAAGAATG GAATTAAGGC TGAATTCAAG ATTTCCGGAA GAACCGATGA TTTACAGCGC
TATAATCTGG CTGTGGCGTT GAGCGAAGAT GCCAAGAAGC TGGGCATTAA TCTTATCGCC
GAAGCATTGG CCTGGGCCGA CTGTAAAGCC CTGACCCGCA CTATACCCAC CTGTTGGGGA
AGCGGTGACT ATAATCCGAT CGACCTTTAC AATGCTCACT ATTCTCAGAT GATTGGCGTC
GGAACCAGCA ATCCTGCCTC CTATGCCAAT CCCAAAGTGG ATGACTATAT CGAGAAAGCC
TTGGCGGCAA CCAGCATGGC AGAAGCCATA GACTATTGGA AGCTATCCCA GTGGGATGGC
GAGACAGGAA CCAGCGTCGA TTATCCCTTC CTGTGGATTG TCAATATCGA CCACACTTAT
TTTGTACGGG ATGGGTTAAG CCTCGGCGAG CAGCGGATTC ACCCCCATGG CCATGGAGTG
CCGGTTATCG CCAATCTGAA TGAGTGGACC TTTGAATCCT GA
|
|---|
| Protein sequence | MKRYNKKWTV LGMLIMSLAL VLAGCGGSNA AVTKEKTNKD ELVIYIGYGM TSGGYDPCTG
YGIYGDGIFH SNLLKFNAQI EAEPDLAVGY TVSDDGLTYT YTLRDDVKFS DGEPLTADDV
AFTYMTAKAS GSSVDLTMLE KAEAKDKVTV VFTLNKKWSA FASTTALLGI VPEHAYGPGY
GDNPIGTGPF KVAQLDKEQQ LIVVPNDYYY GTKPAFKKIT ILNLDEEAAL AAAKSGNLDV
VMVNPEYAYE EVPGMSMARI KTVDNRGFNL PVIGETKDGK GNVIGNNVTS DYAVRKALNI
GIDRETIIQN ALNGIGTPAY GRVDALPWNN TPEFEDGRVE EAKALLAEAG WIDTDGDGIR
EKNGIKAEFK ISGRTDDLQR YNLAVALSED AKKLGINLIA EALAWADCKA LTRTIPTCWG
SGDYNPIDLY NAHYSQMIGV GTSNPASYAN PKVDDYIEKA LAATSMAEAI DYWKLSQWDG
ETGTSVDYPF LWIVNIDHTY FVRDGLSLGE QRIHPHGHGV PVIANLNEWT FES
|
|---|
| |