| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0568 |
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| Symbol | |
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| ID | 7257535 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 626708 |
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| End bp | 629164 |
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| Gene Length | 2457 bp |
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| Protein Length | 818 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 643560486 |
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| Product | DNA ligase D |
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| Protein accession | YP_002457070 |
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| Protein GI | 219666635 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000109107 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTCAA AACTCAATCA GTACAACCAA AAAAGGAATT TCACCAGAAC CTTGGAGCCG
GAGGGGATCA CAGAAATGCC CCAGGAGGGG CTGAGGTTTG TAGTGCAGCA CCATCTGGCC
CGCAGAGATC ACTACGATCT TCGTCTGGAA TGGGATGGAG CCATGTTAAG CTGGGCAGTG
CCCAAGGGGC CTTCCTACAA TACCCGGGAT AAGAGACTGG CTGTACAGGT GGAGGATCAT
CCTTTGGAAT ACAGGCATTT TGAGGGGACC ATTCCCAAAG GGGAATACGG GGGCGGTGTG
GTCATGCTCT GGGATGAAGG CTTCTGGGAA CCTTATGTGG ATGTGGATGG GGGACTCCAT
GAAGGTATGC TGAAGTTTGT ACTGAAGGGC AGAAGGCTTA AAGGCAGGTG GGCTCTGGTA
CGGATGAAAG GGAAAGCCGG GGACAAGAAG GATAACTGGT TGTTGCTTAA AGAAAAAGAC
GACTATGTGC AAACTGCCGA CGGAATTTCC CAATTTATCA CCAGCATCAG GACCGGACGC
ACCATGACGG AAATTGAAGA AGGGGAGGAG GAAAAATTCA CCCGAAACCC CTTCAGCAGT
ACGGAAGTGC AGCTTGCCAA ATTAGTCCGT CACCTTCCCG AGGGTGAGGG CTGGCTTTAT
GAATTGAAGT ATGACGGCTA TCGGATCGTG GCCTATCTTG AAGGGCACAG GGTCCGGCTT
ATGACCAGGA ACGGCCATGA TTATACAGAG CGGTTCCAGG ATGTGGCCTC TTCCCTCGCT
GATTGGGCTG AGGGAAGGGC CATGATTCTG GATGGGGAAA TGGCCATTAC GGATCCGGAG
GGCAAGACGG ACTTTCAGGC TTTGCAGAAC TATTTGAAAA ATCCCCGGAC CAAAAACCTG
ACCTATATCC TCTTTGATCT CCTGGCCCTG GATGGAGCCG ACTTGCGGGG ACACCCCCTG
ATCCACAGGA AGGAAACCCT GGCGGCCTTG CTGGAGAATG CTCCCCCAAA CCTTCACTAC
AGCCGGCATG TGAGGGGAAA GGGCGAAGAA AGTTTCCGGG CGGCTTGTGA AGCAGGCATG
GAGGGGATTA TCGGCAAAAA AGCCGATGCC CTTTACAGCG GAACCAGGAA CGGCGACTGG
ATCAAGCTGA AATGTGATCA AAGGCAGGAA TTCATCATCG TCGGCTATAC TCTTTCCCAG
AAAAGAATCA GTGGGATCAG CTCCCTTCTC CTGGGTATTT ACGAAGGCCG GGAATTGGTC
TATGCCGGCC GGGCCGGTAC CGGCCTGAAG GAAAGCGACA TGGAGGAACT TGAAGAGAAA
TTTAAGGACA TCAGGAGAAG TTCGGCGCCC TTTAAACCTG CTCCTAAGCC CAGAGCCAAT
GAACGGATCA CCTGGGTGGA ACCTGAACTG GTGGTGGAGG TTAAGTTTGC CGATTGGACC
GAAGAGAATC TATTGAGGCA GGCCAGCTTC AAAGGCTTGC GGGCGGATAA GAACCCCAGG
GAGATCAGGA GGGAGAGGGC GGATGAGGAA AAAGATGATG GGGAACTGCA GCTTCAGCCA
CCTGCCCCTG AAAGGAAGAG CCTCATGAAA ATCAATACCA ACAGCATGAT TATCGAAGGA
ATCAAGATCA GCAGTCCGGA CAAGGTGATC TTCACCGATC CTGAAATCAC CAAAGTGGAT
ATGATCCGGT ATTACGCCAA GGTGGCAGAG CGCATGCTGC CCTATGTAAG CCGCCGGATT
CTCAGCATTG TCCGCTGTCC CAAAGGGGTA GCCCAGACCT GCTTTTATAA GAAGCATCCC
GGCCCCGGCA GTCAGGGAGT TGTCACTATT CCCATTCTCA CCAGTGACGG AACAACAGAG
GACTACTTCT ATATTGAGAA CCCTTCCGGG CTGATCGCCG AAGCCCAAAT GGGCACTCTG
GAATTTCACA TCTGGGGGAG CCGTGTTGAT GAGCTGGAAA AGCCGGATCT GATGGTCTTT
GATCTGGACC CCGACGAGGG AATGGAGCTG GGTACGGTGC GCCAGGGTGT GCGGGATCTG
AAAACCATCC TTGCCGAGCT TTCCCTGAAC TCCTATCTCA AGACCAGCGG GGGCAAAGGA
TACCATGTGG TGGTCCCCTT AAAACCCGCC GTTTCCTGGG GAGTCTTTCA TGATTTCGCC
CAAGGCGTCG CCCAGGTCAT GGAGCAGAAA TGGCCGGATC GTTACACAAG CAATGTGCGC
AAGGCCAAGC GCACCAACAG GATCTTCATC GACTGGATTC GCAACGGCCG GGGAGCCACC
AGCATTGCCC CCTATTCCCT GAGAGCAAGA AGGGGAGCCA AGGTATCCAT GCCCATCACT
TGGGAGGAGC TGGATACAGT GGCTCCCGAC GGTGTGGATA TGGCGGAGGC CCTGCGCAGG
ATCCAGGACA GTGATCCCTG GGAAGGGTTT TTCCGGAATC AGCAGCGGCT TCAGTGA
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| Protein sequence | MRSKLNQYNQ KRNFTRTLEP EGITEMPQEG LRFVVQHHLA RRDHYDLRLE WDGAMLSWAV
PKGPSYNTRD KRLAVQVEDH PLEYRHFEGT IPKGEYGGGV VMLWDEGFWE PYVDVDGGLH
EGMLKFVLKG RRLKGRWALV RMKGKAGDKK DNWLLLKEKD DYVQTADGIS QFITSIRTGR
TMTEIEEGEE EKFTRNPFSS TEVQLAKLVR HLPEGEGWLY ELKYDGYRIV AYLEGHRVRL
MTRNGHDYTE RFQDVASSLA DWAEGRAMIL DGEMAITDPE GKTDFQALQN YLKNPRTKNL
TYILFDLLAL DGADLRGHPL IHRKETLAAL LENAPPNLHY SRHVRGKGEE SFRAACEAGM
EGIIGKKADA LYSGTRNGDW IKLKCDQRQE FIIVGYTLSQ KRISGISSLL LGIYEGRELV
YAGRAGTGLK ESDMEELEEK FKDIRRSSAP FKPAPKPRAN ERITWVEPEL VVEVKFADWT
EENLLRQASF KGLRADKNPR EIRRERADEE KDDGELQLQP PAPERKSLMK INTNSMIIEG
IKISSPDKVI FTDPEITKVD MIRYYAKVAE RMLPYVSRRI LSIVRCPKGV AQTCFYKKHP
GPGSQGVVTI PILTSDGTTE DYFYIENPSG LIAEAQMGTL EFHIWGSRVD ELEKPDLMVF
DLDPDEGMEL GTVRQGVRDL KTILAELSLN SYLKTSGGKG YHVVVPLKPA VSWGVFHDFA
QGVAQVMEQK WPDRYTSNVR KAKRTNRIFI DWIRNGRGAT SIAPYSLRAR RGAKVSMPIT
WEELDTVAPD GVDMAEALRR IQDSDPWEGF FRNQQRLQ
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