Gene Dhaf_0449 details

Gene Information

• Locus tag: Dhaf_0449
• Symbol: rpsD
• ID: 7257416
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 482528
• End bp: 483154
• Gene Length: 627 bp
• Protein Length: 208 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 643560368
• Product: 30S ribosomal protein S4
• Protein accession: YP_002456952
• Protein GI: 219666517
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.0010581
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATACAGGCCC TGTTTGTCGT TTATGCCGCC GGGAAGGTAT GAAGCTCTTC 
CTTAAGGGAG ATCGTTGTTA TACAGGCAAA TGCGCGATCG ATCGTCGTGC CTATGCCCCT 
GGTCAGCACG GCCAAAGCCG TGGCAAGAAG CCAACTGAAT ATGGTATTCA GTTGCGTGAA 
AAACAAAAAG TCCGCCGGAT CTATGGCGTT CAGGAAAAAC AATTCCGCAG CTACTATGAT 
AAGGCTAACC GCCAAAAAGG GATCGTGGGT GAAAACCTGC TTCGTCTCTT GGAGCGTCGC 
CTTGACAATG TAGTATTCCA ACTGGGATTT GCTACATCCC GTCCGGAAGC TCGTCAACTG 
GTGCGCCATG GTCACTTTAC CATCAATGGC CGCCGTGTTG ATATTCCTTC TTTCCTCGTT 
CGTGTGGGGG ATGTCGTTGG TGTCAAAGAA GCCAGCAAAT CTTCACCACG CCTGAAGGAA 
ATCCTGTCCT CTTTGGACCG GACTCCACCG AAATGGATGA GCTTGGATGC TAATGCTGCA 
ACCGGAACAA TCATCGCACT ACCTGATCGA GAAGATATTC AATTGCCCAT CCAAGAACAT 
CTCATCGTTG AAAAATACTC CCGTTAA 

 

Protein sequence

MARYTGPVCR LCRREGMKLF LKGDRCYTGK CAIDRRAYAP GQHGQSRGKK PTEYGIQLRE 
KQKVRRIYGV QEKQFRSYYD KANRQKGIVG ENLLRLLERR LDNVVFQLGF ATSRPEARQL 
VRHGHFTING RRVDIPSFLV RVGDVVGVKE ASKSSPRLKE ILSSLDRTPP KWMSLDANAA 
TGTIIALPDR EDIQLPIQEH LIVEKYSR