Gene Dhaf_0414 details

Gene Information

• Locus tag: Dhaf_0414
• Symbol: rpoB
• ID: 7257381
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: +
• Start bp: 457178
• End bp: 460525
• Gene Length: 3348 bp
• Protein Length: 1115 aa
• Translation table: 11
• GC content: 51%
• IMG OID: 643560333
• Product: DNA-directed RNA polymerase subunit beta
• Protein accession: YP_002456917
• Protein GI: 219666482
• COG category: [K] Transcription
• COG ID: [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit
• TIGRFAM ID: [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type; [TIGR02013] DNA-directed RNA polymerase, beta subunit

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.0178041
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTTCTATC CTGTTAAGGT AGGGACGCGG GAACGCTGGA GTTATTCCAG AATTCGAGAA 
GTTCTCGACA TGCCAAATCT AATCGAAATT CAGCAAAACT CTTATCAGTG GTTTCTTGAT 
GAAGGGTTAA GGGAAATGTT CAGGGATATT TCCCCCATTC AAGATTTCAC AGGCAACCTT 
GTATTGGAAT TTATCGACTA TAGTTTAGGA GAGCCTAAAT ACGAGGTGGA AGAGTGTAAG 
GAACGCGACG TAACGTATGC GGCACCTCTG CGGGTTAAAG TTCGTCTCAT TAATAAAGAG 
ACAGGGGAAG TGAAGGAACA AGAGGTCTTC ATGGGTGATT TTCCCTTGAT GACCACCAAA 
GGAACCTTCA TTATTAACGG AGCAGAACGG GTTATCGTCA GTCAGCTGGT TCGTTCTCCC 
GGTGTTTACT ATTCCGAAAG CATCGACCCC AGCGGGAAGA AAGTCTTCGG AGCGACGGTT 
ATTCCTAACC GTGGAGCTTG GTTAGAGTTT GAAACGGACG TTAATGATAA TATTTTTGTT 
CGTGTGGATA GAACTCGTAA ACTTCCAGCC ACCGTATTGA TTCGGGCTTT GGGTTATGCT 
ACCAATGGGC AGATTGCCGA GCTTTTCGAT GATAACGAGC ATATCCGTAT TACCCTGGAG 
CGGGATAATA CGGAGTCGGC AGAGGAAGCC CTGGTGGAAA TCTACAAGCG TCTGCGCCCG 
GGAGAACCTC CCACTGTGGA CAGTGCGCGC TCTCTATTAG AAGCATTATT TTTTGATCCC 
AAGCGTTATG ATCTGGCTAA AGTAGGCCGC TATAAACTCA ATAAAAAGCT GAAGCTCAGT 
GTTCCTACTG ATGTGCATCA TTTGACCAAG GAAGATATCG TGGCTTCCCT GCGGCAAATG 
CTGACCCTGA TGAGCGGAGA AGGACATAAG GATGATATCG ATCATCTGGG CAATCGCCGC 
CTTCGTTCCG TGGGAGAGCT GCTGCAGAAC CAATTCCGGA TCGGTTTATC CCGTATGGAG 
CGGGTGGTCC GGGAACGGAT GACTATTCAG GATGTGGATG TGATCACGCC TCAGGTTCTG 
ATCAATATCC GTCCTGTAGT GGCTGCCATT AAGGAATTCT TCGGCAGCAG TCAGTTGTCC 
CAATTTATGG ACCAAACCAA TCCTTTGGCT GAACTGACCC ATAAGCGCCG TCTCAGTGCC 
CTGGGACCCG GTGGTCTAAG CCGTGAACGG GCCGGCTTTG AGGTGCGTGA CGTTCACCAC 
TCTCACTATG GCCGGATGTG CCCCATCGAG ACTCCTGAAG GTCCCAACAT CGGTTTGATC 
GGCTCCTTAA GCACCTATGG CCGGATTAAT CCCTATGGAT TTATTGAAGC TCCTTACCGT 
AAAGTGAACA ATGGTCAGGT TACGGATCAG ATCGATTACC TGACCGCCGA CGAAGAAGAG 
AAATTCGTCG TAGCTCAGGC CAATGCTCCT TTGACGGATG ACGGGCATTT CATTGAAGAG 
AAGATCGATG GACGTCATGG TCCCGACTTC GTTTTGGTGG CGCCGGAGCG GATTGACTAC 
ATGGACGTTT CTCCGAAACA AATGGTATCC ATCGCGACGG CCTTAATTCC CTTCCTGGAG 
CACGACGACG CCAACCGTGC TTTGATGGGC GCTAACATGC AGCGGCAGGC TGTGCCCCTT 
TTGCGCACCG ATGCTCCCTA TGTGGGAACA GGGATGGAGT ACAAAGCGGC CAAGGATTCC 
GGAGTCTGTG TCTTAGCTTC TAAAGACGGC ACTGTGGAGC GGGCTACAGC CGAGGATATC 
ATCATCCGTC ATGACGACGG AACCCTGGAG AAGCATAAAC TCTTAAAGTA CCTGCGCTCC 
AACCAGGGAA CCTGTATCAA TCAACGTCCC ATCGTGATGA AGAATGAGCG GGTGGAAGCA 
GGTCAGATCA TCGCTGACGG TCCATCTACG GATCATGGTG AGCTGGCTCT TGGCCGCAAC 
GTTTTGATCG CTTTTATGAC CTGGGAAGGT TATAACTATG AGGATGCTAT TCTGATCAGC 
GAAAAGCTGG TTAAGGAAGA TTACTATACC TCCATCCACA TTGAAGAGTA TGAAGCCGAT 
GCCCGGGACA CTAAACTGGG ACCGGAAGAA ATTACCCGGG ATATTCCTAA CGTCGGGGAA 
GATGTGCTGA AAGATTTGGA TGAGCGGGGA ATTATCCGCA TCGGTGCGGA AGTCAGCACC 
GGGGATATCC TGGTGGGTAA AGTTACTCCG AAAGGTGAAA CGGAGCTTAC CGCGGAAGAG 
CGCCTTCTCA GAGCCATTTT CGGCGAAAAA GCCCGGGAAG TGCGGGATAC CTCTCTGCGT 
GTACCTCACG GGGAAGCCGG CAAGATCGTG GATGTCAAAG TCTTTACCCG GGAAAACGGG 
GATGAGCTGG CCCCTGGAGT CAACGAGCTG GTACGGGTCT ATATCGCTCA AAAACGGAAA 
ATCTCCGTTG GGGATAAAAT GGCCGGCCGC CACGGCAACA AAGGGGTTAT CTCCCGCATT 
ATGAAGCAGG AAGATATGCC TTTCCTGCCT GACGGAACTC CGGTGGAAAT CGTCTTGAAC 
CCCCTGGGTG TTCCTTCCCG GATGAACATC GGTCAGGTTA TGGAAACCCA TTTAGGCTGG 
GCGGCGAAAG CTCTCGGACT TCGTTTGGCC ACACCGGTCT TTGACGGAGC ACAGGAAGAG 
GATGTCTTTG CCACCCTTAG AAAAGCCGGA CTTCCAGAGA CAGGCAAAAC CGTACTTTAC 
GACGGACGGA CGGGAGATCC CTTTGATAAT AAGATTACCG TCGGCTATAT GTACTTCCTG 
AAGCTCCACC ATCTGGTGGA CGACAAGATT CATGCCCGGT CCACCGGACC CTACAGCTTG 
GTTACACAGC AGCCCTTGGG CGGTAAAGCC CAATTCGGCG GTCAGCGTTT CGGGGAGATG 
GAGGTTTGGG CTCTGGAGGC TTATGGAGCA GCCTATACTC TCCAGGAGAT TCTTACCGTC 
AAGTCTGACG ATGTGGTGGG ACGGGTCAAG ACTTATGAAG CCATTGTTAA AGGTGAAAAC 
ATCCCTGAAC CGGGAGTTCC GGAATCTTTT AAGGTTCTCA TCAAAGAGTT GCAAAGCTTA 
GGGCTTGATG TCCGCGTGCT TTCTGAAAAC GACGAAGAAA TTGAAATCCG TGAAATCGAT 
GAGGATGTGA CCGAGACGGC GAAAGAGCTG GGCATCGATC TTCATGAAGA CCTCCCGGCG 
CCTGTCATCC ATGAAGCCGG TGAAGGTGAG GATGATGAGT ACTTCGAAGA GGACGAAGAA 
GCTGTTGATG ATGAGCCGAT GACCTTTGAT GATGACGATA TGGAATAG 

 

Protein sequence

MFYPVKVGTR ERWSYSRIRE VLDMPNLIEI QQNSYQWFLD EGLREMFRDI SPIQDFTGNL 
VLEFIDYSLG EPKYEVEECK ERDVTYAAPL RVKVRLINKE TGEVKEQEVF MGDFPLMTTK 
GTFIINGAER VIVSQLVRSP GVYYSESIDP SGKKVFGATV IPNRGAWLEF ETDVNDNIFV 
RVDRTRKLPA TVLIRALGYA TNGQIAELFD DNEHIRITLE RDNTESAEEA LVEIYKRLRP 
GEPPTVDSAR SLLEALFFDP KRYDLAKVGR YKLNKKLKLS VPTDVHHLTK EDIVASLRQM 
LTLMSGEGHK DDIDHLGNRR LRSVGELLQN QFRIGLSRME RVVRERMTIQ DVDVITPQVL 
INIRPVVAAI KEFFGSSQLS QFMDQTNPLA ELTHKRRLSA LGPGGLSRER AGFEVRDVHH 
SHYGRMCPIE TPEGPNIGLI GSLSTYGRIN PYGFIEAPYR KVNNGQVTDQ IDYLTADEEE 
KFVVAQANAP LTDDGHFIEE KIDGRHGPDF VLVAPERIDY MDVSPKQMVS IATALIPFLE 
HDDANRALMG ANMQRQAVPL LRTDAPYVGT GMEYKAAKDS GVCVLASKDG TVERATAEDI 
IIRHDDGTLE KHKLLKYLRS NQGTCINQRP IVMKNERVEA GQIIADGPST DHGELALGRN 
VLIAFMTWEG YNYEDAILIS EKLVKEDYYT SIHIEEYEAD ARDTKLGPEE ITRDIPNVGE 
DVLKDLDERG IIRIGAEVST GDILVGKVTP KGETELTAEE RLLRAIFGEK AREVRDTSLR 
VPHGEAGKIV DVKVFTRENG DELAPGVNEL VRVYIAQKRK ISVGDKMAGR HGNKGVISRI 
MKQEDMPFLP DGTPVEIVLN PLGVPSRMNI GQVMETHLGW AAKALGLRLA TPVFDGAQEE 
DVFATLRKAG LPETGKTVLY DGRTGDPFDN KITVGYMYFL KLHHLVDDKI HARSTGPYSL 
VTQQPLGGKA QFGGQRFGEM EVWALEAYGA AYTLQEILTV KSDDVVGRVK TYEAIVKGEN 
IPEPGVPESF KVLIKELQSL GLDVRVLSEN DEEIEIREID EDVTETAKEL GIDLHEDLPA 
PVIHEAGEGE DDEYFEEDEE AVDDEPMTFD DDDME