Gene Dhaf_0352 details

Gene Information

• Locus tag: Dhaf_0352
• Symbol: carB
• ID: 7257317
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Desulfitobacterium hafniense DCB-2
• Kingdom: Bacteria
• Replicon accession: NC_011830
• Strand: -
• Start bp: 389157
• End bp: 392384
• Gene Length: 3228 bp
• Protein Length: 1075 aa
• Translation table: 11
• GC content: 55%
• IMG OID: 643560269
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_002456855
• Protein GI: 219666420
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit; [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000999114
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCTAAGA GAGAAGATAT TAAGAAGATA ATGATCATCG GTTCCGGCCC CATCGTCATC 
GGGCAGGCTG CCGAATTTGA CTATTCAGGA ACCCAGGCTT GCAAAGCCCT CAAAAACTTA 
GGTTATGAAG TGGTGTTGGT GAACTCCAAT CCCGCCACGA TTATGACGGA TGCCGGTACG 
GCTGATGCTA CCTACATCGA GCCTCTCAAT GTCCAGAGAA TCACCGAGAT CATCGAGAAA 
GAGCGCCCCG ATGCCCTTCT GCCCAATTTA GGAGGACAAT CCGGGCTAAA TCTGAGTTCC 
GAACTGGCCA AAGCGGGAAT TCTCGATCAC TATGGCGTGA AAGTCATCGG GGTACAGCTG 
GATGCCATCG AGCGGGGGGA AGACCGCATC GCCTTCAAGG AGACCATGGA ACGCCTGGGT 
ATCGATATGC CCAAAAGCAG CCCTGCTTAC ACTGTGGAAG AAGCCGAGAA AATCGCTCAG 
GAGCTGGGCT ATCCCGTGGT GATTCGTCCT GCTTACACCC TGGGCGGCAC CGGGGGCGGC 
CTGGTCTACA ATGTGGAAGA ATTAAAAACC ATCGTGAACC GGGGCATCTC CGCCAGCATG 
ATCGGACAGG TTCTGGTGGA AGAATCCGTC CTGGGCTGGG AAGAGCTGGA GCTGGAAGTG 
GTCCGGGACT CCAAAAACCA AATGATCACC GTCTGCTTCA TCGAAAACAT CGACGCTATC 
GGCGTCCATA CCGGGGATTC CTTCTGCAGC GCCCCCATGC TGACCATCTC TCAGGAGCTT 
CAGGAAAGGC TTCAGAAATA CGCCTACTCT ATCGTGGAAG CCATCGAAGT CATCGGTGGG 
ACCAATGTCC AATTCGCCCA TGATCCCAAA ACCGACCGGG TGGTGATCAT CGAGATCAAC 
CCCCGTACCT CCCGCTCCTC CGCCCTGGCT TCCAAAGCCA CCGGGTTCCC CATTGCCCTG 
ATCTCTTCCC TGCTGGCCGC CGGCCTGACC CTGGATGAAA TCCCCTACTG GCGGGAGGGA 
ACCCTGGATA AATATACTCC CTGGGGTGAC TATGTAGTGA TCAAGTTCGC CCGCTGGGCC 
TTTGAAAAGT TCAAGGGTGT GGAAGACAAA CTGGGCACCC AGATGCGGGC CGTGGGTGAA 
GTCATGAGCA TCGGCAAAAA CTATAAAGAA GCCTTCCAAA AAGCCATTCG CAGTTTGGAA 
ATAGGCCGTT ACGGCTTAGG CTTTGCCAAA GATTTCAACA CCAAGACCCT CCCCGAGCTT 
CTGGAGCTGC TGAAAACCCC TACCAGTGAA CGGCATTTTA TGATGTACGA AGCCCTCCGC 
CAAGGGGCTG ATCCGGCGGA GCTTGCCGCC ATCACCTATG TCAAGACCTG GTTCATTGAA 
CAAATGAAGG AATTGGTGGA CCTGGAAGAA AAGATCCTGG AGTATCAAGG CCGGGAGCTC 
CCCGCCGAGC TCCTGATCCA AGCCAAAAAG GATGGTTTTG CCGACCGCTA TCTGGCCCAG 
CTCTTAGGTA TTTCTGAGAC GCAAGTCCGC CGGCAGCGCC TGGGGCTGGG GTTGACCCAG 
GCCTGGGATG CCGTACCTGT AAGCGGGGTA AACAACGCCT CCTATTATTA CTCCACCTAT 
AATGCCCCGG ACAAGGTCAC CACCAGCCAG AGGGAAAAGG TCCTCATCCT GGGCGGCGGC 
CCCAACCGCA TCGGCCAGGG CATCGAATTT GACTACTGCT GCGTTCACGC CGCTTTTGCC 
TTAAAAAACC TGGGCTATGA AACCATCATG ATCAACTGCA ACCCCGAGAC CGTATCCACC 
GATTATGACA CCTCGGATAA GCTATATTTC GAGCCCCTGA CTGTGGAGGA TGTCTTAAGC 
ATCTATGAAA AAGAACGCCC CATCGGCGCC ATCGTCCAAT TCGGAGGCCA GACACCCCTG 
AATATCGCCG CCCAGCTCCA GGAGGCGGGA GTAAGAATTC TCGGTACCGT ACCGGAAGTC 
ATCGACCAGG CTGAGGATCG GGATCAGTTC CGCAAAATGA TGGAGAAACT GGCTATCCCC 
ATGCCCCAGG CAGGTATGGC CAGCACTCTG GAGGAAGCTT TGGCAGCGGC GGAGATGATC 
GGTTATCCCG TCATGGTTCG TCCCTCCTAT GTCCTGGGAG GCCGGGGCAT GGAAATTGTC 
TTTGATGAAG AACAGCTGCG GGAATATGTG GCCGCCGCCG TGGACATCAC CCCGGAACGC 
CCCATTCTTA TCGATAAATT CCTGGAGAAT GCCATCGAAG CAGAAGCCGA TGCCGTCTCA 
GACGGTACTC ATGCCTTCGT CCCTGCCGTT ATGGAGCACA TCGAGCTGGC GGGGATCCAT 
TCCGGAGACA GTGCCTGCGT CATTCCTCCC CTGACCATTG CCGACCGCCA TTTGCGCACC 
ATTATCGATT ATACCCAGCG GATTGCCCAG GAACTCCATG TGGTAGGGCT TATGAATATC 
CAGTACGCCA TCGCCGAGGA TAAGGTCTAC GTCTTAGAGG CCAATCCCAG AGCTTCCCGC 
ACCGTACCCC TGGTCTCCAA AATCTGCAAC ACCCCCATGG CCAGGCTGGC CACGGAGTTG 
ATACTGGCTG ATTATACCGG GCAAAAGAAC GATATCGCAA CCAACTTCAA GCCTGCTCAG 
ATCTCCCATT ACGGCGTCAA AGAAGCGGTC TTCCCCTTTG ACAAATTCCC TGAAGTAGAT 
CCCGTCCTCG GCCCGGAAAT GCGTTCCACC GGAGAGGTTT TGGGCATGGC CAATTCCTTC 
GGCCTGGCCT ATTTCAAGGC TCAGGAAGCA ACCCACTCCT CCCTGCCCTT CAGCGGAACC 
GTCCTTATGA GCATTGCCGA ACAGGACCGC TCTTCAGGGG TCATCGAAAT CGCCCAGGAA 
TTCCTCAAGC TGGGCTTTAA GATCAAAGCC ACTCAGGGGA CCCGGAAATT CCTTCAGGAT 
CATAGCATTG ACGCCGAATT CATCCATAAA ATTGAGGAAG GCCGTCCCAA TATCACTGAT 
GGTATTATGA ACGGCGAGAT CCAATTGGTC ATTAACACCC CCATCGGCAA ACGCAGCCTC 
AAAGATGATT CCTACATCCG CAAGACCGCC ATTAAGTATA AGATCCCTTA TATCACCACC 
ACCCCGGCCG CCTTAGCCAG CGCCAAAGGA ATTGCCGCAT CTCAGGAGGC GGCAGCCAAT 
AAAACCGTGG TTAAATCCCT GCAGGAATAT CATGGTGAGA TAATGTAA 

 

Protein sequence

MPKREDIKKI MIIGSGPIVI GQAAEFDYSG TQACKALKNL GYEVVLVNSN PATIMTDAGT 
ADATYIEPLN VQRITEIIEK ERPDALLPNL GGQSGLNLSS ELAKAGILDH YGVKVIGVQL 
DAIERGEDRI AFKETMERLG IDMPKSSPAY TVEEAEKIAQ ELGYPVVIRP AYTLGGTGGG 
LVYNVEELKT IVNRGISASM IGQVLVEESV LGWEELELEV VRDSKNQMIT VCFIENIDAI 
GVHTGDSFCS APMLTISQEL QERLQKYAYS IVEAIEVIGG TNVQFAHDPK TDRVVIIEIN 
PRTSRSSALA SKATGFPIAL ISSLLAAGLT LDEIPYWREG TLDKYTPWGD YVVIKFARWA 
FEKFKGVEDK LGTQMRAVGE VMSIGKNYKE AFQKAIRSLE IGRYGLGFAK DFNTKTLPEL 
LELLKTPTSE RHFMMYEALR QGADPAELAA ITYVKTWFIE QMKELVDLEE KILEYQGREL 
PAELLIQAKK DGFADRYLAQ LLGISETQVR RQRLGLGLTQ AWDAVPVSGV NNASYYYSTY 
NAPDKVTTSQ REKVLILGGG PNRIGQGIEF DYCCVHAAFA LKNLGYETIM INCNPETVST 
DYDTSDKLYF EPLTVEDVLS IYEKERPIGA IVQFGGQTPL NIAAQLQEAG VRILGTVPEV 
IDQAEDRDQF RKMMEKLAIP MPQAGMASTL EEALAAAEMI GYPVMVRPSY VLGGRGMEIV 
FDEEQLREYV AAAVDITPER PILIDKFLEN AIEAEADAVS DGTHAFVPAV MEHIELAGIH 
SGDSACVIPP LTIADRHLRT IIDYTQRIAQ ELHVVGLMNI QYAIAEDKVY VLEANPRASR 
TVPLVSKICN TPMARLATEL ILADYTGQKN DIATNFKPAQ ISHYGVKEAV FPFDKFPEVD 
PVLGPEMRST GEVLGMANSF GLAYFKAQEA THSSLPFSGT VLMSIAEQDR SSGVIEIAQE 
FLKLGFKIKA TQGTRKFLQD HSIDAEFIHK IEEGRPNITD GIMNGEIQLV INTPIGKRSL 
KDDSYIRKTA IKYKIPYITT TPAALASAKG IAASQEAAAN KTVVKSLQEY HGEIM