| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dhaf_0131 |
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| Symbol | |
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| ID | 7257080 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfitobacterium hafniense DCB-2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011830 |
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| Strand | + |
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| Start bp | 136541 |
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| End bp | 140134 |
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| Gene Length | 3594 bp |
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| Protein Length | 1197 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 643560034 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_002456636 |
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| Protein GI | 219666201 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.10317 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGGTCC TCTTGGCGGA TGTCCATGGT TTTGTGTTGC CTGAAAGGAA GGATTTTTTG
AAAACCCTCA GCCATTATTT GCGTTTAGGC TTCGATATTG AGGCAGTGGA CAAGGCGATA
TCCTATAAGG AATGGCCGCA AATGATCTAT AATTTAACAG GAAGTCAGAA GCCTGCCTTT
GCTGCCCAGC TGATCCAAAA GGGTAAGCCG GGGCTGATTA TTACTTATTC GGAGGAGCTT
GCGCAAAAAT GGGTCAATGA CTTGCGTTCC TGGCTTCCCG GGGAAGATGT GCTCTATTTT
CCCTCCTCGG AATGGCTGCC CTTTGAGGTC CTGGGCAAAA GCCGTGAGAC CACCATCGAG
AGAATCCGGG TTCTCAACCG TTTGGCACAG GATAACCAAT GTACGGTGGT CGTGCCGGCT
TTGGCAGTGA ATCAGCGGAG CTTTTCCCGC CGCCGTTGGC AGGAGTACAT CCTGGAATTA
AAGGAAGGGA CATCCTATGA TCTGAAAGAT CTTGCCCAGA AGCTGAGCAC GGCAGGTTAC
GAGCGGCTGG ACGTGGTGGA TGGGAAGGGT CAATTTGCGA TTCGGGGCGG GATCATGGAT
ATTGCTCCAC TGGATGGGGA GCCTTTACGG GTCGAGTTTT TTGATGATGA AGTGGACTCC
ATCCGGGTCT TCGATCTGGA GACCCAAAAA TCCACTGAGA CCCTGAAAAG CGTTAAAATC
CCTCCGGCCT TGGAGGTTGT GATTCGCCCT GAGGAATTGG AGAAGCTGGG CTGGGAGGTT
CGGGCTCAGG CCAGGAAGCA AGCTGGACGC TTAAACCGCA GCGGTCGTTC GGATGTGGCC
GAGCAGGTTA TGAAACAAGC CCAGAGGATT GAAGAACGGT TGAAAACAGG CCGGGTGGAT
GAAAGCATCT ATCCCTATCT GAGCCTTCTT GAGGAGCCCC TGGAGCCTTT TTTCTCACTG
CTTTCTCAAG ATCATTATGT CATTTTGGAT GAGCCACTGC GGCTGAAAGA ACAGCTGGAG
TTCCAACAGA AGGAAAGGCT TGAGGAATAT ACCCAGGCTT TGGCCAAGGG TGAGGAATTT
TATAGCCCTG AGGATCAATT TGTAAGCTAT GAACAATTCC TGAGATATGG GGAAAAGCAT
CCGTTTGTTT TGATCTCCAC CTTACCCAGA GAAATTCCCG GGGTGGCTCC GAAACGGATT
TTCAATTTAA ATGCCCGGCC TTTGACGGGC TTTATGGGGA AAACCGGGAT TTTGGTGGAT
GAGATTGAGC ATTGGCAAAA ATCCGGCCAT ATTGTAAATC TTTTCGTTGG TGATGAAGAG
CACGCAGAGC GGATGCTGCA AGGTTTAAGG GATCGGGGAG CTCTGGCCAA AAAGCATGAG
CTCCATGAGC CGGTTCAGGA GGGCGGAGTC TATGTCTATT CATCCTCCCT TGATCAGGGG
TTTGAGCTTC CCTTAAGCAA GCTGATTGTC CTGAGTGAGG CGGAGATTTA TAAACGGGAG
CGCAAAGCGG CCGTCAAGCG CAAAAAGGCC CCTGAGAAAA CAGGGCAGAG GCTGCAATTT
GCGGATCTTA AGCCGGGAGA CTTTGTGGTC CATGTTCATC ATGGCATTGG TCAATTTATG
GGCATTGAGC GGATTGCCGT GGGGGGAGTG GAAAAGGACT ATTTTTCGGT CAAATATGCC
GGCCAGGATA AGCTCTATGT TCCCCTGGAT CAGCTTAACT TTTTGCAGAA ATATTTAGGA
AGTGATGCGG AGACCCTGCC CAAGCTTTAT AAGCTGGGGG GTTCCGAATG GAAAAAGGTC
AAGGCCAAGG CGAAAAGCGC CATTAAGGAA ATGGCCTTTG ATTTGGTTAA ACTTTATGCC
CAGCGGGAGG CGACCAAGGG CTATGCCTTT TCTCCCGATA ATGTCTGGCA GCAGGAATTT
GAGGAGAAGT TCCCCTACCA GGAGACCCCG GATCAAATGC AATGCATCGT CGAAGTCAAA
CAGGATATGA TGCGCCAGCG GCCCATGGAT CGCCTGCTCT GCGGGGATGT GGGCTATGGC
AAGACGGAGG TGGCCCTGCG GGCGGCCTTT AAGGCGGTTA TGGACAGCAA ACAAGTGGCG
GTCCTGGTTC CCACCACCAT CCTTGCTCAG CAGCATTTTA ATACCTTTCA GGAGCGTTTT
ATGGGCTATC CTGTGAGCAT CCAGATGCTG AGCCGTTTTC GCTCCGCCAA GGAGCAGAAA
CTGATTCTGC AGGGATTAAA GGAAGGCTCC ATTGATATTG TGGTGGGGAC CCATAAGCTG
GTCTCAGATT CGATTAAGTT TAAGGATTTG GGACTTTTAA TCGTTGATGA AGAGCAGCGG
TTTGGGGTGG CCCATAAAGA GAAGCTGAAA ACCCTTAAAG CCAATGTGGA TGTCCTCACC
CTGTCGGCCA CACCTATTCC CCGTACCTTG CATATGTCTC TGGTAGGGGT GCGGGACCTC
AGTATCATTG AGACCCCGCC GGAGGATCGT TTTCCCGTCC AGACCTATGT GGCGGAATTC
CGGCCGGATG TGGTGAGAGA AGCCATTCGC CGGGAGATCC AGCGGGGGGG CCAGGTCTTC
TTTGTCCATA ACCGTGTGGA AGATATGGAG CAGGTGGTTC ATTTCCTCAG CCAGCTGGTC
CCTGAGGCCC GCTACGGCAT TGCCCACGGG CAGATGAGCG AAAAAGAATT GGAGCAGGAG
ATGCTGGCTT TTCTGGAGCA TGAAAGCGAT GTCCTGGTCT GCACCACCAT CATTGAGACA
GGCTTGGATA TGCCTAATGT CAACACCCTG ATCATTGATG AGGCGGATCG CCTTGGTCTG
GGGCAGCTTT ATCAGCTGCG GGGCCGGGTA GGGCGTTCCA ACCGGCGGGC TTATTCTTAC
TTTTTATATA AACCCCAAAA AGTGCTTACA GAAGTGGCAG AAAAGCGCCT GGCAGCCATA
CGGGAATTTA CCGAGTTTGG CTCCGGCCTT AAAATTGCCA TGCGGGACTT GGAGATTCGC
GGGGCCGGGA ATCTGATTGG AGCCCAACAG CATGGTCATT TAGCTGCCTT GGGATTTGAG
CTTTATAGCC AGATGCTTAA GGAAGCGGTA CAGGAGCTCA AGGGTGAGCA GGTGGAGGAA
AAGATCGAGA CCAGTATCGA GGTTCAGGTG GATGCCTATC TGCCGGATAT CTATATTGGG
GAGCGCCAGC TTAAAGCGGC TCTCTATCAG CGGATGGTAG CCATCGATAA TGAAGAGGAC
CTCAGCATGA TGATCGATGA ATTGATTGAC CGTTTCGGCA CTCCGCCCCG GGAAGTGGAG
AATCTTTTGA AGATTGTCCG AATTAAATGG ATGGCCTCAG GGATGAAGAT TGAACAGATC
CAGCAGCTCA AGCAGCAGAT GGTGTTCCGC TTTGCGGCTG ACCCCGGCAT ATCCGGGGAA
ATGCTGATGA CCATGGCGAC CCAATCCCCC TATCCGGTTT CCTTTGGAAC CACCGGCAAC
GGCAATCTTG AGATCAAGGT CCGTTTGCGC TCCGTTGTCC AAGAGGAGCT TTTAGAAGCG
ATCCATAAAG TGTTAATGGT ATTTAATGGT ATTGCGTCCA AAACAGCATC CTGA
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| Protein sequence | MGVLLADVHG FVLPERKDFL KTLSHYLRLG FDIEAVDKAI SYKEWPQMIY NLTGSQKPAF
AAQLIQKGKP GLIITYSEEL AQKWVNDLRS WLPGEDVLYF PSSEWLPFEV LGKSRETTIE
RIRVLNRLAQ DNQCTVVVPA LAVNQRSFSR RRWQEYILEL KEGTSYDLKD LAQKLSTAGY
ERLDVVDGKG QFAIRGGIMD IAPLDGEPLR VEFFDDEVDS IRVFDLETQK STETLKSVKI
PPALEVVIRP EELEKLGWEV RAQARKQAGR LNRSGRSDVA EQVMKQAQRI EERLKTGRVD
ESIYPYLSLL EEPLEPFFSL LSQDHYVILD EPLRLKEQLE FQQKERLEEY TQALAKGEEF
YSPEDQFVSY EQFLRYGEKH PFVLISTLPR EIPGVAPKRI FNLNARPLTG FMGKTGILVD
EIEHWQKSGH IVNLFVGDEE HAERMLQGLR DRGALAKKHE LHEPVQEGGV YVYSSSLDQG
FELPLSKLIV LSEAEIYKRE RKAAVKRKKA PEKTGQRLQF ADLKPGDFVV HVHHGIGQFM
GIERIAVGGV EKDYFSVKYA GQDKLYVPLD QLNFLQKYLG SDAETLPKLY KLGGSEWKKV
KAKAKSAIKE MAFDLVKLYA QREATKGYAF SPDNVWQQEF EEKFPYQETP DQMQCIVEVK
QDMMRQRPMD RLLCGDVGYG KTEVALRAAF KAVMDSKQVA VLVPTTILAQ QHFNTFQERF
MGYPVSIQML SRFRSAKEQK LILQGLKEGS IDIVVGTHKL VSDSIKFKDL GLLIVDEEQR
FGVAHKEKLK TLKANVDVLT LSATPIPRTL HMSLVGVRDL SIIETPPEDR FPVQTYVAEF
RPDVVREAIR REIQRGGQVF FVHNRVEDME QVVHFLSQLV PEARYGIAHG QMSEKELEQE
MLAFLEHESD VLVCTTIIET GLDMPNVNTL IIDEADRLGL GQLYQLRGRV GRSNRRAYSY
FLYKPQKVLT EVAEKRLAAI REFTEFGSGL KIAMRDLEIR GAGNLIGAQQ HGHLAALGFE
LYSQMLKEAV QELKGEQVEE KIETSIEVQV DAYLPDIYIG ERQLKAALYQ RMVAIDNEED
LSMMIDELID RFGTPPREVE NLLKIVRIKW MASGMKIEQI QQLKQQMVFR FAADPGISGE
MLMTMATQSP YPVSFGTTGN GNLEIKVRLR SVVQEELLEA IHKVLMVFNG IASKTAS
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