Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_3176 |
Symbol | |
ID | 7175122 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 4005518 |
End bp | 4008139 |
Gene Length | 2622 bp |
Protein Length | 873 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 643541712 |
Product | DNA topoisomerase III |
Protein accession | YP_002437580 |
Protein GI | 218888259 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 75 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAAGA CCCTGATCAT CGCGGAAAAG CCCTCCGTCG CGCGCGAACT GGCTCCCCTT GTGGGCGCCA CGCAGCGCCG GGCGGGCTTT CTGGAAGGGC CGGACCATCT GGTCAGCTGG GCCGTGGGGC ATCTTGTGGG CATTGCCGAG CCGGAAGAAC AGGACCCGGC CTGGGCTGGC CGCTGGACCC TGGACCAGTT GCCCATGCTG CCGCCGCGCT TTCGGCTGCG GGTGCTGCCG GAAACGGCGG ACCAGTTCGC CGTGCTGCGC CGCCTGCTGA CCGACGAGCG CGTCACCGGC GTCATCAACG CCACCGACGC CGGACGCGAG GGCGAGCTGA TCTTTCGGCG CATCTACCTG ATGGCCGAAT GCGCGAAACC CGTGCGCCGC CTGTGGGCCA GCGACATGAC CGAAGAAGGC CTGCGCAAGA GCCTTGCCCG CCTGCTGCCA GACGCGGAAA AGCGCAACCT GGGCCTGGCA TCCTTTGCCC GGGCCGAGGC CGACTGGCTG GTGGGCATGA ACTATTCGCG CCTGTTCACG GTAAGGACCG GCGGCCTCGT CTCCGTGGGG CGCGTGCAGA CCCCGGTGCT GTGCCTGCTC ACCGCCCGCC GCCGCGAAAT CGAACAGTTC GTGCCGCAGG ATTTCTGGAC AGTTGAAGGG GTGTTCACCC CCGGCGGCAA GGGACGCGCC GCGCAGGGCG GCGTGGCAGC ACCCGATGCG TCACCGGACG CGACAGCCGA TGCTTCGCCC GCGGGCACAC AGGACACGCC CGCACCCGCT TCCGACGCGC CGGACTCCTT CCCCGCCGTA TGGCACCGCC CGCCCGAACT GCGCGAAACC CGCGTGGACA GCGAGGATGA GGCCTCGGCC ATCGCCAACG CCTGCACCGG GCGCGAAGGC GTGGTGGAAT CGGTGGCCAG CAAGGCGGGC AGCCAGCAGC CGCCCCTGCC CTTCGACCTG ACCACCCTGC AGCGAGAAGC CAACACCCGC TTCGGCCTGT CCGCCAAGGA CACCCTGGCC CACGCCCAGG CGCTGTACGA AACGCACAAA CTGATCACCT ACCCGCGTAC CGATTCCCGT CACCTGACCA AGGAGCTGTT CGCGGAAATC CTGAATCACT TCCGGGCCAT CCACCACCTG TACCCGGACG AGACCATGCT GGCGGTCGCG CGCATCAAGT CCGGCAAGGT CAAGTTCCCC TGCGTGGATG ACCGCAAGGT CACCGACCAC CACGCCATCA TCCCCACCGC CCGCAAGGGC GACCCGGCCC GCCTTTCGCA GCCGGAACGG CAGATCTACG AGATGATCTG CCGCCGGTTC ATCGCCGCCT TCTGCGCCGA GGCCAGGTTC GCCACCTCCA CCGTCACGGT GAAGGTGGGC GAGCACGCCT TCATCGCGCG GGGCAAGGTG TTCAAGGAAA AGGGCTGGCT GGCCGTGGAA CCGTGGCGCG CGGCGGAAGA CACCCCCCTG CCCCCCCTGC GCAAGGGTGC AAGATTGCAC ACGGACGACA TCCGCCGGGT GACGCGCCAG ACCAAGGCCC CGGCCCACTA CACCGATGCC TCGCTGCTGG CGGCCATGGA AACCGCCGGA AAGCTGGTGG AGGACGAGGA ACTGCGCCAG GCCATGAAGG AACGCGGCCT CGGCACCCCC GCCACCCGCG CCCAGGTCAT CGAAACGCTG CTCCAGCGCG GCTACGTGGG CAGGCACGGC AAGCGGCTCA TCGCCAGCGA CCGGGGCATG CAGGTGGCCG AGGTCATTGA GGCGCTGCTG CCCGACGTGG CCTCGCCAGA GCTGACCGGC ACGTGGGAAA AGGCCCTCAA GGACATGGAG GCGGGCACCG CCACCTACCC GCAGTTCATG CACGGCATAC GCGAAAGCGT GTGGAACGGC GTGCACCGCA TCAAGCGGGT GGGCGGACGC AATCTGGACC GCCTGCTGGA TACGGCGTCG GAACGCTACG CCCGCACGCC CGACGGCCTG TGCCCCCTGT GCGGTGGCGA GGTGCGCGAA ACCCCGCGCG GCTGGGCCTG CACCGGCCAG CCACCCGCCA AAAAACGCGG CAAGGCGGCA AACGGGGACG ACAGCGCCGG GCAGGACGCC GCACGCGCCA AACGCGGCGC GAAAAAGACC GGCGCGCCGA ACGGCGGGCC AGACGCCGCG CCAAACAGTG AAGCAGACGG CGGAACGCCC CCCGCCAATG GTGGCCGCTG CCCGTTTATT CTCTGGCGCA CCTCCTTCGG GCGCGAACTG GACGAACCCA CCGCGCGCGA ACTGCTGGCC ACCGGGCGCA CGGCGCAGGC CATGGACTTC ACCTCGCGCC AGGGCAAGCC GTTCCGGGCG CATCTGGTGC TGAAGGGGGG CCGCCTGCGC CCCGAATTCG TACCGGACGG ACCGCGCAGG GCTTCGGATG GCGCTTCCGC CCCGCAACAG CCGGAAGAAA ACACGCAGCC CGCCGGCAAT GCCGCCCCCG GCACGTCCAA TGCGGCGGGC ACGCCCGGCT CACTGGGCAC GCCAGGCGCG CCAGGCGCAT CCGGTGCATC AGGCGTAGCT GGTGAACCGG ACGAACCGGA CGAACCGGCC GAACGGGGCG AACAGGATAC GCCCGGCAGC GACGACATCT AG
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Protein sequence | MSKTLIIAEK PSVARELAPL VGATQRRAGF LEGPDHLVSW AVGHLVGIAE PEEQDPAWAG RWTLDQLPML PPRFRLRVLP ETADQFAVLR RLLTDERVTG VINATDAGRE GELIFRRIYL MAECAKPVRR LWASDMTEEG LRKSLARLLP DAEKRNLGLA SFARAEADWL VGMNYSRLFT VRTGGLVSVG RVQTPVLCLL TARRREIEQF VPQDFWTVEG VFTPGGKGRA AQGGVAAPDA SPDATADASP AGTQDTPAPA SDAPDSFPAV WHRPPELRET RVDSEDEASA IANACTGREG VVESVASKAG SQQPPLPFDL TTLQREANTR FGLSAKDTLA HAQALYETHK LITYPRTDSR HLTKELFAEI LNHFRAIHHL YPDETMLAVA RIKSGKVKFP CVDDRKVTDH HAIIPTARKG DPARLSQPER QIYEMICRRF IAAFCAEARF ATSTVTVKVG EHAFIARGKV FKEKGWLAVE PWRAAEDTPL PPLRKGARLH TDDIRRVTRQ TKAPAHYTDA SLLAAMETAG KLVEDEELRQ AMKERGLGTP ATRAQVIETL LQRGYVGRHG KRLIASDRGM QVAEVIEALL PDVASPELTG TWEKALKDME AGTATYPQFM HGIRESVWNG VHRIKRVGGR NLDRLLDTAS ERYARTPDGL CPLCGGEVRE TPRGWACTGQ PPAKKRGKAA NGDDSAGQDA ARAKRGAKKT GAPNGGPDAA PNSEADGGTP PANGGRCPFI LWRTSFGREL DEPTARELLA TGRTAQAMDF TSRQGKPFRA HLVLKGGRLR PEFVPDGPRR ASDGASAPQQ PEENTQPAGN AAPGTSNAAG TPGSLGTPGA PGASGASGVA GEPDEPDEPA ERGEQDTPGS DDI
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