Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_2198 |
Symbol | |
ID | 7174120 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 2747636 |
End bp | 2751232 |
Gene Length | 3597 bp |
Protein Length | 1198 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 643540718 |
Product | DEAD/DEAH box helicase domain protein |
Protein accession | YP_002436609 |
Protein GI | 218887288 |
COG category | [R] General function prediction only |
COG ID | [COG1205] Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCCACG CCCCCGAAGA TTCTCGCCTG CCCGGCACGT CCGCGTCCTT CAACCCCACG GACACGCCGG GGCAGGGCAC TGCCCCTGCC GCGCCTGCCG CCGCGTCGTC GCCCCGCAAC ACCGCCACTA TTCCCGACGC CCCTGACGCG CCGCGCGCCC CCCTGAACTT CGACGCGGAC AACCCCGTGC GCGACTACAT CACCGCGCTA CTGGCCTCGC CCTTCGGGCG GCAGGTCACC CATCACCGCG CCCTGCCCGC GCGCGAGGCC GACCATGCCC CCAACCGCCG CCCGTGGGCC AAGGCCATCC GCGACATCCT TGCCCGCAAC GGCATAGGCG ACCTGTACAC CCATCAGGCC CGCGCCACCG ACCTCATCCG CGCCGGGCGG CATGTCGTCG TCGCCACGCC CACGGCCAGC GGCAAGACCT ACGTGTACAA CCTGCCGGTA CTGGAACGCT TTCTGTCCGA CCCGGACGCC CGCGCCCTGT ACCTGTTCCC GCTGAAGGCC CTGGCCCAGG ACCAGCTTTC CACCTTCACC GGCCTTACCG CCGCCTGGCC CGATGACGCC CGCCCCCGCG CCGCCATCTA CGACGGCGAC ACCACCGACC ACTTCCGCCG CAAGATCCGC CAGAACCCGC CCACCGTGCT GCTGACCAAC CCGGAAATGC TGCATCTGGC CATCCTGCCG CACCACCAGC AGTGGACCAG CCTGCTGGCC TCGCTGGCCT TCATCGTGGT GGACGAAGTG CACACCTACC GGGGCGTGCT GGGCGCGCAC ATGGCCCAGG TGTTCCGCCG CCTGCTGCGC GTGTGCGCCC GCTACGGCGC GCACCCCACC TTCGTGTTCT GCTCCGCCAC CGTGGGCAAC CCCGGCGAAC TGGCCGCCAA TCTCACCGGG TTGGGTGGGG ATTTGGAAAA CAAGAATCTT GTGGGGGAAG GGGTCTCCTT CCCCCACACC CCCATCCCCC CAAAGTTTTC AAATGAGGCT ATACACGCAC CCCACCCCAC CGGAATCAGT GGGCACGAAG TGCACGCTGA TTCCGCAAAA GGGGTCAAGG GGGCGCGGCC TCCTTGCGGG GAGGCAGGGG GCAGCGCCTC CTGCGATATC AACGTCATCA CCGAGAGCGG CGCGCCGCAG GGCCTGCGAC ACTTCGTGTT CGTGAACCCG GACGACAGCC CGTCCACGGC GGCCATCCAG TTGCTGCGCG CGGCCCTGGC GCGCGGCCTG CGCACCATCG TGTACTGCCA GTCGCGGCGC ATGACGGAAC TGATCAGCAT GTGGGCGGCG GAAAAGGCCG GGCCGTACCG CGACCGCATC AGCGCCTACC GCGCCGGGTT CCTGCCGGAG GAGCGGCGCG ACATCGAGGC GCGCATGGCC GGTGGCGACC TGCTGGCGGT CATTTCCACC AGCGCGCTGG AGTTGGGGAT AGACATCGGC GGGCTGGACC TGTGCATTCT GGTGGGCTAC CCCGGCACGG TCATGTCCAC CCTGCAACGC GGGGGCCGGG TGGGCCGCGC GCAGCAGGAA TCGGCGGTGA TTCTGGTGGC CGGAGAAGAC GCGCTGGACC AGTACTTCGT GCGGCACCCC AACGAATTCT TCGACCGGCC CGCAGAGCAC GCCGTGGTCA ACCCGGACAA CCCGGTCATT GCCAAGCGGC ACATCGAATG CGCCGCCGCC GAACTGCCCC TTCCTGCCGA CGAGCCGTGG CTGGCCGCGC CGGGCGCCGC AACCGCGCTG GCGGAACTGG AAGCCGAAGG GCTGGTGCTG CGCAGCGCCG ACGGCACCAC GCTGCTGGCC GCGCGCAAGC GGCCCCACCG CCACGTGGAC CTGCGCGGCA GCGGCAACAC CTTCACCATC GAGGATGGCG ACGGAAACGT CATCGGCAGC GTGGACGGCC ACCGCGCCTA CCGCGAAACC CACCCCGGCG CGGTGTACCT GCACCGGGGC CGCAGCTGGG TTATCACCCG GCTGGACCCC GGCGCGCAGA AGGTGGTGGC GGAGCAGGCC CGCGTGTCGT GGTTCACCCG CGTGCGCGCC AACAAGACCA CGGAGATCCT CGACATCCAC GACCAGTGCG TGGCCTGCGG CACCCGCGTG TTTCTGGGCA AGCTGCGGGT GACGGAAACC ATCACCGGCT ACGAGAAACG CAGCGTGTCC GGCCAGCGGT TGTTGTCCGT GGTGCCGCTG GACGCGCCGC CCTTCGTCTT CGAAACCGAG GGGTTGTGGT TCGAGATTCC CGACGCCGCA CGCATCGCCA CCGAGAACGA ACTGCTGCAC TTCATGGGCG CCATCCACGC GCTGGAGCAC GCCGCCATCG GCATCCTGCC GCTGCTGGTC ATGACCGACC GCAACGACCT TGGCGGCATC TCCACCCCCA TGCACGCGCA GGTGGGCCGC CCCGCCGTGT TCATCTACGA CGGCCTGCCG GGCGGGGCCG GGCTGACCCG CGCCGCCTTT GCCGAGGCCG ACGCGCTGTT CCGCGCAACC CGCGCCGCCA TTGCCGAATG CCCGTGCGAA ACCGGCTGCC CCTCGTGCGT GCATTCGCCC AAGTGCGGCT CCGGCAACCG GCCCATCGAC AAGGCAGGCG CGCTGTTTCT GCTGGACCGC ATGGCCAGCG GCACGCCGGA ATCCGACCCG GTGCAGCCCG GGCTGGAGCA GGGGGGAAAG CAGGGAGAAG AGATGAATAT TTTTGAAGAA GAAGCGGGTG TGAAGAGCCG GGGCGCTGCC CCGGACCCCG TTGGGGGATC ATATATCCCC CAAACCCCCT TTCTGGGTCC GGGCGATGAC GCCCGAAGCG GGCATCATCA CCCGGACGAG ACAGCGCGTC ACGATTTTCA GTATATGGAA GAAGGGGACA CGCGATACCG TCCGATGCCT ACCGGACACA CCGGAACCGA GAGGACTGCG CCCAGCCGTC CGGATTCGGA CCCGCGCCCG ACACAAGGCC ACGTCACGGC ACATCTCCCC AGGAAGCACA CCATGACCAC ATCCCCCCGC GACACCGGGC CTCTGCCTGC GTCACCGGCG GCAGGCAAGA CGGACGGCAG GATCATCGCC CCCGTGGGCC GTTACATGGT GCTGGACGTG GAAACCCGCC GCGCGGCGGC GGAAGTGGGC GGCTGGCACC GGGCCGACCG CATGGGCGTG AGCGTGGCCG TGCTGTACGA CGCCGCCGAC GATTCCTACA CCCCCTACGA GCAGGACGCC GTGCCCGAGA TGCTCGACCG CCTGCGCGCG GCGGACCTGG TGGTAGGCTT CAACATCTCG CGCTTCGACT ACGCGGTGCT TTCGCCCTTC GCCCCCTACG ACCTGCACAC CCTGCCCACC CTGGACATGC TGACCAAGGT AAAGGACCGC CTGTCCTACC GCATCTCGCT GGACAACCTG GCCCAGACCA CCTTCGGCAC GCCCAAGTCG GCGGACGGCC TGCAAGCCCT GCAATGGTGG AAGGAGAAGC GCCTCGACCT CATCACCGAA TACTGCCGCA AGGACGTGGA AATCACCCGC GCCCTGTTCC TGCATGGCCG CGAAAAGGGC TACCTGCTGT TCACCAACAA GGCCGGTCAG GCCGTGCGGG TGCCGGTGGC GTGGTAG
|
Protein sequence | MPHAPEDSRL PGTSASFNPT DTPGQGTAPA APAAASSPRN TATIPDAPDA PRAPLNFDAD NPVRDYITAL LASPFGRQVT HHRALPAREA DHAPNRRPWA KAIRDILARN GIGDLYTHQA RATDLIRAGR HVVVATPTAS GKTYVYNLPV LERFLSDPDA RALYLFPLKA LAQDQLSTFT GLTAAWPDDA RPRAAIYDGD TTDHFRRKIR QNPPTVLLTN PEMLHLAILP HHQQWTSLLA SLAFIVVDEV HTYRGVLGAH MAQVFRRLLR VCARYGAHPT FVFCSATVGN PGELAANLTG LGGDLENKNL VGEGVSFPHT PIPPKFSNEA IHAPHPTGIS GHEVHADSAK GVKGARPPCG EAGGSASCDI NVITESGAPQ GLRHFVFVNP DDSPSTAAIQ LLRAALARGL RTIVYCQSRR MTELISMWAA EKAGPYRDRI SAYRAGFLPE ERRDIEARMA GGDLLAVIST SALELGIDIG GLDLCILVGY PGTVMSTLQR GGRVGRAQQE SAVILVAGED ALDQYFVRHP NEFFDRPAEH AVVNPDNPVI AKRHIECAAA ELPLPADEPW LAAPGAATAL AELEAEGLVL RSADGTTLLA ARKRPHRHVD LRGSGNTFTI EDGDGNVIGS VDGHRAYRET HPGAVYLHRG RSWVITRLDP GAQKVVAEQA RVSWFTRVRA NKTTEILDIH DQCVACGTRV FLGKLRVTET ITGYEKRSVS GQRLLSVVPL DAPPFVFETE GLWFEIPDAA RIATENELLH FMGAIHALEH AAIGILPLLV MTDRNDLGGI STPMHAQVGR PAVFIYDGLP GGAGLTRAAF AEADALFRAT RAAIAECPCE TGCPSCVHSP KCGSGNRPID KAGALFLLDR MASGTPESDP VQPGLEQGGK QGEEMNIFEE EAGVKSRGAA PDPVGGSYIP QTPFLGPGDD ARSGHHHPDE TARHDFQYME EGDTRYRPMP TGHTGTERTA PSRPDSDPRP TQGHVTAHLP RKHTMTTSPR DTGPLPASPA AGKTDGRIIA PVGRYMVLDV ETRRAAAEVG GWHRADRMGV SVAVLYDAAD DSYTPYEQDA VPEMLDRLRA ADLVVGFNIS RFDYAVLSPF APYDLHTLPT LDMLTKVKDR LSYRISLDNL AQTTFGTPKS ADGLQALQWW KEKRLDLITE YCRKDVEITR ALFLHGREKG YLLFTNKAGQ AVRVPVAW
|
| |