| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_1477 |
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| Symbol | |
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| ID | 7173386 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | - |
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| Start bp | 1809643 |
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| End bp | 1811835 |
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| Gene Length | 2193 bp |
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| Protein Length | 730 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 643539989 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002435893 |
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| Protein GI | 218886572 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 83 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCCCG GTTCGCCCGG GTCACCCGAT GCTTCCGATT CCCCTGATTC CCCTGGATAT
TCTGACGCGC CCCTTTCTCC CGGCCCGTTC GCTGCCCCTG CCTGCGACCC TCCGGCCCCC
CCATCCTTCG GCGTATCGCT GTACGAGCAG CTGTTCCGGT ACCATTCGGC GGTGATGCTG
CTGGTGGACG CGGAAACGGG CTGCATCATC GAGGGCAATC CGGCGGCATC CACCTTCTAC
GGCTACCCGG ACGGGGCGTT GTGCGGCATG TCCATCAACG ACATCGCCAA CCTGGGACCC
GAGGAACAGG CGCGGCGGCT GGCCGAACTG CGCGAGGGGC GGCTGACGTG TTTCACCTCG
CGCCACCGCC TGGCGTCTGG CGAGGTGCGC GACGTCGAAG TGCATTCCGT GCCGGTGCGG
CTGTTCGAAC GCACCCTGCT GTACACCATC ATCCACGACA TCACCGACCG CGTCCGGGCC
GAGGAAGCCC TGCGCCGCAG TGAACAGCAT CTGGAAATGG TTATGGACGG GGCGGGCATC
GGCAGTTTCA GCTGGCATGC GCTCACCGAC GAGGTGGCCT GCGACACCCG CTGGGGCGAG
GTGCTGGGGC TTGGGCGGGT GGAATGCGCG CCCATGATGG AATCGTGGCG CAACATGGTG
CATCCGGACG AGCTGCCGGG GCTGGAACGG GCGCGACGGC GGCATCTTTC CGGGTTCACG
CCCCGTTACG AGGCGGAATA CCGGGTGCAG GGGGCGGACG GCGCGTGGCG CTGGATTCAG
GAAACGGGCC AGGTGGTGGA ACGCGACGGC GACGGCCTGC CCCTGCGGGT GGCGGGCATC
GTGTGCGACG TGTCCGTCCG GCGGCGCGCG GAAGAAGACC GGCGGCGGCT GTTCAACCTG
TCGCCGGACC TGATGTGCGT GGGCGGGGTG GACGGCTACT TCCGTGAACT GAATCCCGCC
TGGCAGGAGG TGCTGGGCTG GTCCAGGGAA GAATTGCTGG ACCGTCCGTG GGCTGCGCTG
GTGCACCCCG ATGACCGCGC CTCCACCATG CAGGACATGG ACACGCTGCG CGAGCGCGGC
GTGATCACCA ACGTGGAGAA CCGCTACCAG TGCCGCGACG GCACGTGGCG CTGGATATCC
TGGAATTCCG CCTTCGTGCC CGAGCAGGGG CTGATCTACG GCGTGGGGCG CGACGTCACG
GCGCTGCGGC GCATGGTGGA AGAATTGCGC ACCAGCGAGG CGCGCCTGCG GGCCATGGCG
GCCACGGTGC CTGGGGTGGT GCTGCAATGG CGCGAGGTGC CCGGTGACCG GCAGTTCACC
TACGTCAGCC CGCGCAGCCG GGAGATACTG GGCGTGCCCC CCGAGTGGCT GTTGCAGGAC
TGGCGGGCCC TGCCGGTGCA TCCGGCGGAC CGCACGGTGT GGGAACTTTC GCTGCGCGAT
GCCATGGAAC GGCGCGGGGA CTGGATGTTC GAAGGGCGGC TGGTGCTGCC CGGCGGAGAG
GTGCGCTGGT GGCGGGGCGA GGCCAGGCCC GTGCATGGCG GGCAATCCGG TGCGGCGGAA
CTGCCGGAGG AGTCGGGCAT CGTCTACTGC GGCATCATCA CCGACACCAC GGAGCATCGC
GAGGCGCAGG AACGGCTGCG CCAGCTGGCC ACCACCGACG GGCTGACCGG GCTGGCCAAC
CGCAGGCGGT TCCTGGAGGC GCTGGAGCAC GAGGTGCAGC GCCACCGCCG GTACGGCACC
CCCCTGGCGC TGATCTCCAT CGACGTGGAC CGCTTCAAGC GGGTCAACGA CACCTGGGGC
CATGCCGTGG GTGACGAGGT GCTGCGCGCG CTGGCCGGCA TCTGCCGGGC AGAGGTGCGC
GACGTGGACA CCGTGGGGCG CATCGGCGGT GAGGAATTCG CCGTGCTGCT GCCGGACACC
GCCCCGGAAG AAGCCATGGC CGTGGCGGAG CGGCTGCGGG CGGGCGTGGA GGCGGCGCCC
CTGCTGACTA CCGCCGGACC GCTGACCGTC ACCCTGAGCC TGGGCGTGTC CGCAAGCCCC
CCGTGCGACG GGGCCGATAC GCTGCTGCGC GAGGCGGACA GGGCGCTCTA CCGGGCCAAG
GCGGGTGGTC GCAACCGGGT GGAGCGGGCG TTTGACCTTG CCGGGGCCTG CGCAACGGGC
GACGACGTCG ACACCCTGCT CACCATTCCT TGA
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| Protein sequence | MSPGSPGSPD ASDSPDSPGY SDAPLSPGPF AAPACDPPAP PSFGVSLYEQ LFRYHSAVML
LVDAETGCII EGNPAASTFY GYPDGALCGM SINDIANLGP EEQARRLAEL REGRLTCFTS
RHRLASGEVR DVEVHSVPVR LFERTLLYTI IHDITDRVRA EEALRRSEQH LEMVMDGAGI
GSFSWHALTD EVACDTRWGE VLGLGRVECA PMMESWRNMV HPDELPGLER ARRRHLSGFT
PRYEAEYRVQ GADGAWRWIQ ETGQVVERDG DGLPLRVAGI VCDVSVRRRA EEDRRRLFNL
SPDLMCVGGV DGYFRELNPA WQEVLGWSRE ELLDRPWAAL VHPDDRASTM QDMDTLRERG
VITNVENRYQ CRDGTWRWIS WNSAFVPEQG LIYGVGRDVT ALRRMVEELR TSEARLRAMA
ATVPGVVLQW REVPGDRQFT YVSPRSREIL GVPPEWLLQD WRALPVHPAD RTVWELSLRD
AMERRGDWMF EGRLVLPGGE VRWWRGEARP VHGGQSGAAE LPEESGIVYC GIITDTTEHR
EAQERLRQLA TTDGLTGLAN RRRFLEALEH EVQRHRRYGT PLALISIDVD RFKRVNDTWG
HAVGDEVLRA LAGICRAEVR DVDTVGRIGG EEFAVLLPDT APEEAMAVAE RLRAGVEAAP
LLTTAGPLTV TLSLGVSASP PCDGADTLLR EADRALYRAK AGGRNRVERA FDLAGACATG
DDVDTLLTIP
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