Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_1383 |
Symbol | |
ID | 7173287 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 1692323 |
End bp | 1693762 |
Gene Length | 1440 bp |
Protein Length | 479 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 643539890 |
Product | RNA methyltransferase, TrmA family |
Protein accession | YP_002435799 |
Protein GI | 218886478 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 87 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGATA CCACCCCCCG CCCCGGCGAC CTTCTGGAAC TGACCGTGGA CGCCCTTGCC GCCGGTGGCC GCGCCGTGTG CCGCCACGAG GGCCGCGTCG TGTTCGTGGC GGGCGGCCTG CCCGGCCAAC GCGTGCGCGC CAGACTGACC ACGGTGAAGC GCCGCTTTGC CGAGGCCACG CTGGACGCCG TGCTCGAACC GTCGCCCGTG CAGTGCGCCC CGTTCTGCGC CCACTTCGGC GATTGCGGCG GCTGCGCCTG GCAGGACCTG CCCTACGCCG AGCAGCTGCG CTGGAAGGAG CGCTTCGTGG TTGACGCGCT GGGGCGCATC GGCGGCCTGC GCGACGCCAA CGTGCTGCCC ATCCTGGCTT CCCCCGCCGA GCGCGGCTTT CGCAACAAGA TGGAATTCGC CTTCAGCCAG GACCGCGACG GCCAGTTGCA CCTGGGCCTG CGCCGCCGTG CCTCGCGCGC GGTGGTGGAC ATCACGGAAT GCCACCTGCA AACGCCGCTC ACGGTGCGCA TCGTCGAGGC GGTGCGCGAG CTTGCGCGCG AAAGCGGCCT TCCCGGCTGG GACGACAGCA GGCAGGACGG CTTCTGGCGC TTTCTGGTGG TGCGCGAGCC GGAACTGGGG CGCGATGCCG GGGCCGACAC CCCGGCGGAA GGCGAAGGCC AGGATACGCC GGGCCGCCAG TGCCTGATCC AGTGCATCAC CGGGCGGCAC CCCGGTGCGG CGCAGGCCGT GTCGCGGCTG GCCGAGGCGC TGCGCGCCCG CTTCCCCGAG GTGACCGGCG TGGTGCACTC ACTGCGTCTG GACCCGGAGC AGATCGCCTA CGGCGAACGG GTACTGGCCG TGGACGGCGA GGCCGTGCTG ACCGAGCGCC TGGGCGGCAA CGACCTGCTG CTGGGCCCCG ATTCGTTCTT CCAGACCAAC ACCGCCGCGG CGGGCCTGCT GTATGACGAG GCGCGCCGCA TGGCCGCCGC CGGGCCGGAC GACACGGTGT GGGACCTGTA TTCCGGCGTG GGAGCCATCG CCCTGCACCT GGCCCGCGCC GCCGGGGCGG TGCGCGGTTT CGAGATCACG CCCGAGGCGG TCAACGATGC CCGCGCCAAC GCCGCGCGCA ACAACATCCT GAACTGTTCC TTCGTCTCCG GCGACGTGCG CGCCAGCCTG CGCCGCGAGC GCCCCGGCGA GGGCGTGTCG CCGCGCATCG TGGTCGTGGA CCCGCCCCGC GCGGGCCTGC ACGAGGACGT GGTGGAGGCC GTGTCCGCCC ACCAGCCGGA GCGTATCGTG TACGTTTCGT GCAACCCGGC CACCATGGCC CGCGACGCGG CCCTGTTCAC CGCGCGCGGG TATGCGCTGC AAGAGGCGCG GCCCGTCGAT CTGTTCCCCC ATTCGCCCCA CGTGGAATGC GTGGCCCTGC TGACCCGCAC CGGGGAGTAG
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Protein sequence | MSDTTPRPGD LLELTVDALA AGGRAVCRHE GRVVFVAGGL PGQRVRARLT TVKRRFAEAT LDAVLEPSPV QCAPFCAHFG DCGGCAWQDL PYAEQLRWKE RFVVDALGRI GGLRDANVLP ILASPAERGF RNKMEFAFSQ DRDGQLHLGL RRRASRAVVD ITECHLQTPL TVRIVEAVRE LARESGLPGW DDSRQDGFWR FLVVREPELG RDAGADTPAE GEGQDTPGRQ CLIQCITGRH PGAAQAVSRL AEALRARFPE VTGVVHSLRL DPEQIAYGER VLAVDGEAVL TERLGGNDLL LGPDSFFQTN TAAAGLLYDE ARRMAAAGPD DTVWDLYSGV GAIALHLARA AGAVRGFEIT PEAVNDARAN AARNNILNCS FVSGDVRASL RRERPGEGVS PRIVVVDPPR AGLHEDVVEA VSAHQPERIV YVSCNPATMA RDAALFTARG YALQEARPVD LFPHSPHVEC VALLTRTGE
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