| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0912 |
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| Symbol | |
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| ID | 7172801 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011769 |
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| Strand | + |
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| Start bp | 1096944 |
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| End bp | 1098620 |
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| Gene Length | 1677 bp |
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| Protein Length | 558 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 643539412 |
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| Product | pseudouridine synthase, RluA family |
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| Protein accession | YP_002435335 |
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| Protein GI | 218886014 |
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| COG category | [H] Coenzyme transport and metabolism
[J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0237] Dephospho-CoA kinase
[COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family
[TIGR00152] dephospho-CoA kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 0.00634483 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTCGAATT TACCCCCCCC CCAGGCTGAA ACGCGCACCC ACTCCTTCAC CGTCGCCCCC
GAACACGCCG GGCAGCGGCT GGACCGCTTT CTGGGCGACG CCATGGCCGA ACAGCGCGAA
AGGGACGGCC ACGGCGATGC CGTCTCGCGC GAGAAGGTCA AGCGGGCCAT CCGCGACGGC
GCGGCCACGG TGCAGGGCCG CGCGTGCACC GTGCCCAACA CCCGCGTGGA GCCGGGCCAG
ACGGTAACCC TCACGCTGGC CGTGCCCGCC GCCAAGGTAA CCCCCGAAGA CGGCGACCTG
GCCGTGCTGT ACCGCGATGC GGCCATCGCC GTGCTGGACA AGCCCGCAGG GCTCACCGTG
CACCCCTGCC CCAGCTGCCC GGAAGGCACG CTGGTGCACC GGCTGGTGCG CCACTTTCCC
GAACTGGCCG CGCAGGAGGG CTTTCGCCCC GGCATCGTGC ACCGCATCGA CAAGGACACC
AGCGGCCTTC TGCTGGTGGC CCTGACAGAG GCCGTGCGAC TGGAACTGTC ACGCGCCTTT
GCAGAGCGGC AGGTGCACAA GGAATATCTG GCTCTGGTGC ACGGCGTACC CAAGGCACAG
GGCGAACTGG AGGCCCCCAT TGGCCGCCAC CCGCTGCACA AGGTGAAGAT GGCCGTGGTG
CCGGAAAACC GGGGCGGCAA GCCCGCCCGA TCGGCATGGC GGGTGCTGCT GGCGGACCCG
GACGGACGCT TTGCCCTGGT GGCGGTGCGC ATCTTCACCG GACGTACGCA TCAGATACGG
GTGCACATGG CCCACCTGGG CCACCCCCTG TGGCAGGACG CGGTGTACGG CCCGTCGGAA
GCCGTGGCGC CCGCAGCGGG CGAACTGCCG GACTTTCCCC CGCGCCAGAT GCTGCACGCC
TGGCGCCTGT CGTTCCGGCA TCCGGAAACG GACAGGGACA TGCACTTCAC CTGCCCGCCC
CCGCCGGACT TCGCCGCGCT GGCCCTGCGC CTGTCGCGGC GCATGCAGCG GGTGGTGGTG
ACCGGCTCGC CGGGTTGCGG CAAGTCGGCC CTTGTGCGCC AGTTGGGCGA GGCGGGCCTG
CCGGTGTGGA GCGCCGACGC GGCCGTGGCC CGGCTTTACG AGCCGGGCTG TGGCGGGCAT
CACCTGCTGC GGGGGCGCTA CGGCGACCGC TTCGTGCCCG ACCCCGCCGG ACCGGTGGAC
AAGCGCGCCC TGTTCGCGGC CATGCAGGCA GACGCCGCCC TGCGCCGCGA GGTGGAAGAC
ATGATCCACC CCCTGGCCCG GCACGACATG GACGCATTCT TCGCGCAGGC CGAAACCTCG
GGTGCGCCCG TGGCCGTGGC CGAGGTGCCG CTGTTCCTGG AGGCGGGCTG GAAGTCGGGC
ACGCAGCCGA ACATCCTGCC GAATATCCTC CTTGTCGGCG TGCACTGCCC CTTCGCCGAG
CGTGCCCGCA GGCTGGAAAC ACATCGCGGC TGGCCGCCTG ACATGATCGC CGCCATGGAG
GCCTGGCAAT GGCCGGAGGC GGACAAGATG CGCGCCTGCC ACCTTGTGGT GGACAATTCC
GGCACGCCGG AAGACCTGAC CCGCCGGGCA CGCGGCCTGT TGGCCGAACT GGCCCGCCTG
CGCGCAGCGC GCGATGCCCG CGCCGCCGAC CACCTTGCCT CGCTGTGGCA GGCATGA
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| Protein sequence | MSNLPPPQAE TRTHSFTVAP EHAGQRLDRF LGDAMAEQRE RDGHGDAVSR EKVKRAIRDG
AATVQGRACT VPNTRVEPGQ TVTLTLAVPA AKVTPEDGDL AVLYRDAAIA VLDKPAGLTV
HPCPSCPEGT LVHRLVRHFP ELAAQEGFRP GIVHRIDKDT SGLLLVALTE AVRLELSRAF
AERQVHKEYL ALVHGVPKAQ GELEAPIGRH PLHKVKMAVV PENRGGKPAR SAWRVLLADP
DGRFALVAVR IFTGRTHQIR VHMAHLGHPL WQDAVYGPSE AVAPAAGELP DFPPRQMLHA
WRLSFRHPET DRDMHFTCPP PPDFAALALR LSRRMQRVVV TGSPGCGKSA LVRQLGEAGL
PVWSADAAVA RLYEPGCGGH HLLRGRYGDR FVPDPAGPVD KRALFAAMQA DAALRREVED
MIHPLARHDM DAFFAQAETS GAPVAVAEVP LFLEAGWKSG TQPNILPNIL LVGVHCPFAE
RARRLETHRG WPPDMIAAME AWQWPEADKM RACHLVVDNS GTPEDLTRRA RGLLAELARL
RAARDARAAD HLASLWQA
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