Gene DvMF_0883 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0883 
Symbol 
ID7172772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand- 
Start bp1065847 
End bp1066452 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content64% 
IMG OID643539384 
Product3'-5' exonuclease 
Protein accessionYP_002435307 
Protein GI218885986 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones63 
Fosmid unclonability p-value0.0280341 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGAAGA TTCCCGAACG GTATCGGCGT AAGATCAGCA AGGACGAGAT CAACGAGCTG 
CCCCTCGAGC GGTATGCGGG TGAAATCCGC ATCATCCGCA GCGAGGAGGA ACTCGCTGAT 
GCCGTCGACC GTCTGCGTGA CGAGGACGTG CTGGGCTTCG ACACCGAAAC CCGCCCCACC 
TTCCGCAAGG GCAAGGTCAA CCTGCCGTCG CTGGTGCAGC TTGCATGCAG CGACGTGGTC 
TACCTGTTCC AGCTCAACTG GCTGCCCTTT GGCGAGGCAC TGGCCACAGT GTTGTCCGAC 
GCGGACATCG TCAAGACCGG CGTGGCCGTG CGCGACGACA TCCGCGACTT GCAAAAGCTG 
TTCGCCTTCA ACGACGCGGG CGTGGTGGAC CTGGGAGAGG TGGCGCGCGA CCTGGGCCTT 
GAAACGCACG GCCTGCGCAA CCTTGCCGCC AACTTTCTGG AAGTGCGCAT CTCCAAGGGC 
GCCCAGTGTT CCAACTGGAG CAACCGCGAA CTGGCCCCCC AGCAGGTGCT GTACGCCGCC 
ACCGATGCCT GGGTCAGCCG CGAGATCCAC CTGCGCATGC GCAGGCTGGG GCTCATCGAC 
CGCTAG
 
Protein sequence
MKKIPERYRR KISKDEINEL PLERYAGEIR IIRSEEELAD AVDRLRDEDV LGFDTETRPT 
FRKGKVNLPS LVQLACSDVV YLFQLNWLPF GEALATVLSD ADIVKTGVAV RDDIRDLQKL 
FAFNDAGVVD LGEVARDLGL ETHGLRNLAA NFLEVRISKG AQCSNWSNRE LAPQQVLYAA 
TDAWVSREIH LRMRRLGLID R