| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0696 |
|---|
| Symbol | |
|---|
| ID | 7172583 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 843362 |
|---|
| End bp | 844423 |
|---|
| Gene Length | 1062 bp |
|---|
| Protein Length | 353 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643539196 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_002435121 |
|---|
| Protein GI | 218885800 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR02971] ABC exporter membrane fusion protein, DevB family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 0.24713 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCCCA GGCTGGTTGT CTTTGCCGCG CTTGTCGGCG TGGCGTCGGT GCTCGCGTTT
TCAAGGTCGG TACAGCCGCC GCTGAACGGG CTCATGCCGC GCACGTCCGC GGCGGCGGCC
CTTGAGGAAC GGAAGCAGGG GTGGATAGTC GCCTCCGGAA GGGTCGAGCC GGTGACCAAG
GAACTGGTGC TTGGCTTCGA GACCAGCGGG GTCATCGAAA CGCTGCACGT GGCCGAGGGT
GACAAGGTCG AACAGGGGCA GTTGCTCGCC CGCCTTCGCA ACGAAGTGGA ACTGGCCCAG
CTTGACGAGG CGCGCGCCAA TGCGCTTGCC GCACGAATGG AACTGGAGAA GCTGACCAAC
GGGGCCAGGC CGGAGGAAAA GGGAGAGGCG CAGGCCAGGG AGCGCCGGGC GCTCAAGGTG
TTCGAGCAGG CCCGGCAGGA AGCGGCGCGG CGTCAGCGGC TGCGTTTTCA GGACGCCATC
TCCAGGGAGG ACATGGAACG TGCCCAGCGC GACATGGACG TGGCGAAGCA GGAGTACGAC
GCCGCCTGGC AGCAGCTGAA GCTGGTCGAG GACATGTACC GGCGGGAAGA CGTGGCCAAG
GCAGGACATC AGCTGGCCGC CGCCGAGGCA GCCGTCCGGG TGGCCGAGTC CACACTGCGC
CGCATGGACC TGCGGTCTCC GGTGGCCGGA ACGGTGTTGA GGGTGTTCGG AGAGGCGGGC
GAAGTCTTTT CGCTCTTCGC TCCCTCGCCC GTGATCAGCG TCGGTGACAT TGCGGCGCTC
AACGTCAGGA CAGAAGTGGA TGAACGGGAC ATCGGCCGCG TACGGGTGGG GCAGGCCGCG
TACGTGAGGG CCGATGCCTA TGGAAGTGAG AGGTTCGGCG GCAAGATAAG CCGCGTGGTG
CTCAGCCTGA CGCCCAAGAC GCTGCGCACC GGCAACCCGT CGGAACCGGT GGACCGGAGT
GTGCTTGAGG TGTTGATCAC GCTCGACGCG CCCGGCCCGC TCGTCAGTGG ATTGCGGGTG
GATGCCTACA TCGATGCCTC GGCACTCCCC TTGCCGCAAT GA
|
|---|
| Protein sequence | MKPRLVVFAA LVGVASVLAF SRSVQPPLNG LMPRTSAAAA LEERKQGWIV ASGRVEPVTK
ELVLGFETSG VIETLHVAEG DKVEQGQLLA RLRNEVELAQ LDEARANALA ARMELEKLTN
GARPEEKGEA QARERRALKV FEQARQEAAR RQRLRFQDAI SREDMERAQR DMDVAKQEYD
AAWQQLKLVE DMYRREDVAK AGHQLAAAEA AVRVAESTLR RMDLRSPVAG TVLRVFGEAG
EVFSLFAPSP VISVGDIAAL NVRTEVDERD IGRVRVGQAA YVRADAYGSE RFGGKISRVV
LSLTPKTLRT GNPSEPVDRS VLEVLITLDA PGPLVSGLRV DAYIDASALP LPQ
|
|---|
| |