| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0565 |
|---|
| Symbol | aspA |
|---|
| ID | 7172452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 666005 |
|---|
| End bp | 667570 |
|---|
| Gene Length | 1566 bp |
|---|
| Protein Length | 521 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643539065 |
|---|
| Product | aspartate ammonia-lyase |
|---|
| Protein accession | YP_002434990 |
|---|
| Protein GI | 218885669 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1027] Aspartate ammonia-lyase |
|---|
| TIGRFAM ID | [TIGR00839] aspartate ammonia-lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 62 |
|---|
| Fosmid unclonability p-value | 0.0355315 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCCC TCATGGAATA CCGCATCGAG CGCGACAGCC TTGGCGAACG CAAGGTGCCC
GCCCACGCCT ATTACGGCGT GCAGACCCTG CGGGCGCTGG AGAATTTCGA CGTTACCGGG
CTGACCATTG GCCGCCATCC GCGCTTCGTG CAGGCGCTGG CATCGGTGAA GAAGGCCGCC
GCCCTGGCCA ACATGGAACT GGGCCTGCTG GACGGCGACG TGGGGCAGGC CATCGTGCAG
GCCTGCCGAG AGGTGCGCGA AGGCCGCTTT GACGAGCAGT TCGTGGTGGA CATCATCCAG
GGCGGGGCGG GCACCTCGGT GAACATGAAC GCCAACGAGG TCATCGCCAA CCGCGCGCTG
GAACTGATGG GCCGGACGCG CGGCGAATAC GGCGTGGTTA GCCCGCTGAA TCACGTCAAC
CTCTCGCAGT CCACCAACGA CGTGTATCCC ACGGCATTCC GCATCGCCCT GGTGTGGTAC
GCGCGCGACC TTGGCGTCTC GCTGCGCGAA CTGCGCGACG CCTTCCACGC CAAGGGCGAG
GCCTTTGCCG ACGTCATCAA GATGGCCCGA ACCCAGTTGC AGGATGCCGT GCCCATCACC
CTGGGCGCGG AATTCGCGGC CTACGGGGTG ACCGTGGGTG AGGACATCGA CCGCCTGGCC
GAGGTGGCCC GCCTGCTGTG CGAGGTGAAC ATCGGCGCAA CCGCAGTGGG CACGGGCATC
AATACGGTGC CCGGCTACGC GCCGCTGGTC TGCGACCGGC TGGCGGACAT CACCGGGCTG
CCGCTCTCGC TTTCGCCGAA CCTCGTGGAA GCCACCAGCG ACGCCGGGGC CTACGTCACC
CTTTCCGGGC TGCTGAAACG GGTGGCGGTG AAGCTTTCCA AGATCTGCAA CGACCTGCGC
CTGCTCTCGT CCGGGCCGTT CACGGGCCTT GGCGAAATAT CCCTGCCCGC CGTGCAGCCG
GGGTCCAGCA TCATGCCCGG GAAGGTCAAC CCGGTGATCC CGGAACTGGT CAACCAGGTC
TGCCAGCAGG TCATCGGCAA CGACCTCACG GTGACTCTGG CGGCAGAGGC GGGACAGCTG
GAACTGAACG TGTTCGGCCC CATCATGGCC TGCAACCTGT TCCAGTCGCT GGAAATCCTG
ACGCGGGCGG CGCGCATCCT GCGGGTGCGC TGCGTGGAGG GCATCACCGC CAACCGTGAA
CGCTGCCTGG AACTGCTGCA CGGCTCGCTG GGCATGGTCA CCGCGCTGGC GCCGGTCATC
GGCTACGAGG CGGCGGCAAC GGTGGTCAAG GATGCCCGCG CCACCGGGCG CACCCCGCGC
GACCTGCTGG TGGAGCGGGG GCTGATGCGG TCGGAAGACT ACGACGACCT GATGGACCCG
GCCAAGATGC TCGGCCCGCG CGACGTGCGC GGTCATCGCA ATGGCGCGCT GCGGCAGGAT
GCGGCAGGGC GGGAGGCAGT GGGCAAGGGA ACGGCGGAGC AGGGCGCGGG ACAGGATGGG
GCGTATGGGC CAGCGGGGCG GGATGGACCG GATGGGCCCG GTGAGCCCGG TGAGGAGGAC
GCATGA
|
|---|
| Protein sequence | MTSLMEYRIE RDSLGERKVP AHAYYGVQTL RALENFDVTG LTIGRHPRFV QALASVKKAA
ALANMELGLL DGDVGQAIVQ ACREVREGRF DEQFVVDIIQ GGAGTSVNMN ANEVIANRAL
ELMGRTRGEY GVVSPLNHVN LSQSTNDVYP TAFRIALVWY ARDLGVSLRE LRDAFHAKGE
AFADVIKMAR TQLQDAVPIT LGAEFAAYGV TVGEDIDRLA EVARLLCEVN IGATAVGTGI
NTVPGYAPLV CDRLADITGL PLSLSPNLVE ATSDAGAYVT LSGLLKRVAV KLSKICNDLR
LLSSGPFTGL GEISLPAVQP GSSIMPGKVN PVIPELVNQV CQQVIGNDLT VTLAAEAGQL
ELNVFGPIMA CNLFQSLEIL TRAARILRVR CVEGITANRE RCLELLHGSL GMVTALAPVI
GYEAAATVVK DARATGRTPR DLLVERGLMR SEDYDDLMDP AKMLGPRDVR GHRNGALRQD
AAGREAVGKG TAEQGAGQDG AYGPAGRDGP DGPGEPGEED A
|
|---|
| |