Gene DvMF_0563 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0563 
Symbol 
ID7172450 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp662862 
End bp665171 
Gene Length2310 bp 
Protein Length769 aa 
Translation table11 
GC content64% 
IMG OID643539063 
Productmethyl-accepting chemotaxis sensory transducer with Pas/Pac sensor 
Protein accessionYP_002434988 
Protein GI218885667 
COG category[T] Signal transduction mechanisms
[N] Cell motility 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value0.0025752 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGCTTCA AGAGCATCTC CACGCAGATC ACCGTCCTTA CCGGCGGGCT GGTCATCTTC 
TTCATGTGCG CGTTCGTGTT CATTGCGTCC AAAACCTCCT ACGACGGCAC GCTGCGCAGC
GAAACCGCCA ACATGGTCCA GGTGGGACAG CAGATCGAAA AGGTGGCCGA AGACTTCGTG
ACCAGCAACC TCACCGCCGT GCGCGGGCTG ACCCAGCAAA AGGCGCTGGC CAGCGGGGTG
CTGTACGGCA GCGCCAGCCT GGTCATGAAG GACCAGTTGC AGCAGACCCT GAAGGGCAAT
CCGCATTACG CCGCCATCTT TGCGTTCGAT GCCGCGGGCA AGGTGCTCTA CGGGTATACC
GACGACGGAC AGGAGATTTC CGGCAGGCAA CTGGAGATGC CCGAGGTGCT CGCCGCCGTC
GCCGCGGGCA AGGAATTCGT CGACAGCACG CCGTTCAAGG GCCCCAAGGG GGACGTGCTG
TTCACCATCG CCGCCCCGGT GCTTAACGTC ATGGGGCAAT CGGGCGGGGG CATCGCCATC
ACCCTCGACT GGACCAGCTT CAGCGACCGC TTCGTGGGAA GCGTGAAGTT CGGCCAGCAG
GGGTACCCCT TCGTGCTTGA CGCCAAGGGG CGTTTCCTCT CGCATCCCAA CAAGGCCCTG
CTGCTCACCG ACGCGGCGCA GTACGACTTC GCCCGTGCTG TCCTGGCGCA GCAGACGACA
CAGTTCGAAT ACCTCTGGGA CGGCAAGACG AAAATCCTCG TCAGCTGTAC CATGCCCATA
ACGAATTGGA AAATATGCTC TTCTGCCTAC GAGGACGATC TGGCCACCGT GGCGCGCCAG
CAGCGCATGC TGCTGGCAAT AATGGGGCTG GTGGCCATCG TGGCCTTGAC CGGCTCCATC
GTGCTGCTTA CCCAGCGCCT CATTCTCGGG CCCATGAACC GCATCCGGCA ATTCGCCGGG
CAGGTGGCGC AGGGCGACCT GCGCGCCGTC ATGGACGGCG CCTACCATTT CGAACTGGAC
GAACTGGCTA CCTCCATCCG GATCATGGTG GCCGAGCTGA AGGAAAAGCT GGGGTTCTCG
CAGAGCGTGC TGGAGGCCAT GGTGGTGCCC GTGCTGATCG TTGACCGCGA GGAACGCACG
GTGTTCACCA ACAAGGCCTG CATGGACATG CTGGAAATCG ACACCGACCC CAAGGCGCAG
TACGGCCGCA CCCTGGCCGA GGTATTCTAC AACGAGCCGG GCCGCAAGAC CGCCGTGGGC
CGGGCCATGA ACGAGAAGAC CAGCATCAAG AACCTGGAGG TGGTCATCGC TGGCCACAAG
GGCGGCAAGG TGGACGTGCT GGCCAACGTC ACTTACCTTC AGGATCTGGA CGGCAACGTC
ATCGGCGGCT TCTGCCTGTA CATCGACACC ACCGAGATGA AGCGCCAGGC CGCCATCATC
GCGGAACAGA ACGAACGCAT CGCCCGCGCC TCGGCAGAGG CGGATGACGT GGCCTCGCAA
CTGGCCACCG CGTCGGAGCA GCTTTCGGCG CAGATCGAAC AGTCCGCGCG CGGCTCGGAC
ATCCAGCGCG AGCGCACCGC CGAGGCGGCC ACCGCCATGG AACAGATGAA CGCCAGCGTG
CTGGAAGTGG CCCGCAATGC GGGCGGCGCC GCCGAAATGG CCGAAAAGGC CAAGATCCGC
GCCCAGGAAG GGGCCGAGGT GGTGGACGGC TCGGTGCGCA CCATCCAGCA TGCCCATGAG
CTGGCATCGC ACCTCAAGTC CGACATGGCC GAACTGGGCA CCCAGGCCCA GGGCATCGGC
CAGATCATGA ACGTCATCGC CGACATCGCG GACCAGACCA ACCTGCTGGC GCTGAACGCC
GCCATCGAGG CGGCGCGGGC CGGTGACGCC GGGCGCGGCT TTGCCGTGGT GGCCGACGAG
GTGCGCAAGC TGGCCGAAAA GACCATGACC GCCACCAACG AGGTGGGCAG CGCCATCCGG
GGCATTCAGG AAAGCGCGCG CAAGAACATC GCCAACACCG AAAAGGCCAC CGCCGCCATA
GAGGAAGGCA CTGGCATGGC CCGCCGCTCC GGCGACGTGC TGCGCGAAAT AGTGGGCCTT
GTGGAGAGCA CGGCGGACCA GGTGCGGTCC ATCGCCACGG CGTCGGAACA GCAGTCCGCC
GCAAGCGAGG AAATCAATCG CTCCACCGAC GAGATTACCC GCATCGCCGC CGAAACGGCG
GAAGCCATGC GCCACTCGGC GCAGGCGGTG GAAGATGTCT CGCGGCTGGC TTCGGACCTG
AAGCGGATTA TTGGCGACAT GCACAGTTGA
 
Protein sequence
MRFKSISTQI TVLTGGLVIF FMCAFVFIAS KTSYDGTLRS ETANMVQVGQ QIEKVAEDFV 
TSNLTAVRGL TQQKALASGV LYGSASLVMK DQLQQTLKGN PHYAAIFAFD AAGKVLYGYT
DDGQEISGRQ LEMPEVLAAV AAGKEFVDST PFKGPKGDVL FTIAAPVLNV MGQSGGGIAI
TLDWTSFSDR FVGSVKFGQQ GYPFVLDAKG RFLSHPNKAL LLTDAAQYDF ARAVLAQQTT
QFEYLWDGKT KILVSCTMPI TNWKICSSAY EDDLATVARQ QRMLLAIMGL VAIVALTGSI
VLLTQRLILG PMNRIRQFAG QVAQGDLRAV MDGAYHFELD ELATSIRIMV AELKEKLGFS
QSVLEAMVVP VLIVDREERT VFTNKACMDM LEIDTDPKAQ YGRTLAEVFY NEPGRKTAVG
RAMNEKTSIK NLEVVIAGHK GGKVDVLANV TYLQDLDGNV IGGFCLYIDT TEMKRQAAII
AEQNERIARA SAEADDVASQ LATASEQLSA QIEQSARGSD IQRERTAEAA TAMEQMNASV
LEVARNAGGA AEMAEKAKIR AQEGAEVVDG SVRTIQHAHE LASHLKSDMA ELGTQAQGIG
QIMNVIADIA DQTNLLALNA AIEAARAGDA GRGFAVVADE VRKLAEKTMT ATNEVGSAIR
GIQESARKNI ANTEKATAAI EEGTGMARRS GDVLREIVGL VESTADQVRS IATASEQQSA
ASEEINRSTD EITRIAAETA EAMRHSAQAV EDVSRLASDL KRIIGDMHS