Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0541 |
Symbol | secD |
ID | 7172428 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | - |
Start bp | 636283 |
End bp | 637881 |
Gene Length | 1599 bp |
Protein Length | 532 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 643539041 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_002434966 |
Protein GI | 218885645 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 58 |
Fosmid unclonability p-value | 0.0137043 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGAGG GTTTCCGCTG GAGACTCGCC GTGGTGCTGG CCGTGCTGCT GTTCGGCGCG GCCTACGTGC TGCCGAGCCT GCCGGGCATC AAGTCTTCGC CGTTGGGCCG GTTTCTGCCC GACAGCGCCA TCAGCCTCGG GCTTGACCTC ATGGGCGGCA TCCACCTGAC GCTCGGCGTC GACGTGGACA AGGCCGTGGA AAACTCGCTG ACCCAGATGG GCCAGGACAT CCGCACCTCT GCGCGCGAGA AGGACGTCTT CGTCCTGCGC CCGCGCGTGC TGCCCGGCGA CCGCATAGAG TTCGTGCTGG CCAAGGCCGA GCAGCGCGAC GTGCTGGGCG AACTGCTGGC CAAGCAGTTC CATCAGCTCA GCGTTGCGGC GCCGCAGACC ACCGATGACG GGCAGTTGCG CTACGTGGCC ACCATGAAGC CGGAATATCG CAAGAACATC AGCGATATGG CGCTGGAGCA GGCCGTCAAG ACCATCCGCA ACCGCATCGA CCAGTTCGGC GTGGCCGAAC CGGACATCCG CAAGCAGCAG GACAACCGCA TCCAGATCCA GTTGCCCGGC CTGCACGACA CCCAGCGCGC CATCCAGATC ATCGGCCAGA CGGCCCACCT GGAATTCCAC ATCGTGCGCG ATGACGTGGA CGCGGAAAAG GCCGCGCGCG GCATTCTGCC GCCCGGTACC GAAGTGCGGC CCATGATCCG GCGCGGGGCC GACGGCAGTC AGGCCGAAAC CCCCGTGGTG GTGGACAAGG AAGCCGTGCT TACCGGCGAA TACGTGGCCG ATGCGCGCCC CGGCTTTGAC AATTTCAACC AGGCCTACGT GATGCTGACC TTCAACAGCC GCGGCGCGGC CATGTTCGAA CGCATCACCC AGGAAAACGT GCGCAAGCGC CTGGCCATCG TGCTGGACGG CAAGGTCTAC TCCGCGCCGG TCATCCAGGA AAAGATCGGC GGTGGCCGCG CCAGCATCAC CGGCAAGTTC TCCACGGCAG AGGCGCAGGA CCTTGCCATC GTGCTGCGTG CGGGTTCGCT GCCCGCGCCG GTGAGCGTGC TCGAAGAGCG CACCGTCGGC CCCTCGCTGG GTCAGGAATC CATCGACAAG GGCATCCTTG CCGCCGTTGT CGGCGGCGCG GCGGTGATGA TCTTCATGGT GGTGTACTAC GGCGTATCCG GCCTTATCGC CGACGTCATG CTGTGCTTCA CAGTGCTGCT CATCCTGGCG GGCATGGCGG CCTTCGGCGC CACCCTGACC CTGCCGGGCC TTGCGGGCAT CGTGCTGACC CTGGGCATGG CCGTGGACGC CAACGTGCTG ATCTACGAAC GCATCCGAGA GGAACTGCGC AAGGGGCACA CGGTGCTTTC GGCCATCCAC GAAGGCTTCG ACCGCGCCAC GCTGGCCATC ACCGACTCGA ACCTGACCAC CATCATCGCG TCGGCCATCC TGTACCAGTT CGGCACCGGC CCGGTGCGCG GCTTTGCCGT CACGCTGTCG CTGGGCATCA TCGCGTCCAT GTTCACCGCC ATCTTCGTCT CGCGCGTGGT CTTCCAGGCC TGGAAGGGCG GTTCGGGCGA CAAACGCCTC AGCATATAG
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Protein sequence | MKEGFRWRLA VVLAVLLFGA AYVLPSLPGI KSSPLGRFLP DSAISLGLDL MGGIHLTLGV DVDKAVENSL TQMGQDIRTS AREKDVFVLR PRVLPGDRIE FVLAKAEQRD VLGELLAKQF HQLSVAAPQT TDDGQLRYVA TMKPEYRKNI SDMALEQAVK TIRNRIDQFG VAEPDIRKQQ DNRIQIQLPG LHDTQRAIQI IGQTAHLEFH IVRDDVDAEK AARGILPPGT EVRPMIRRGA DGSQAETPVV VDKEAVLTGE YVADARPGFD NFNQAYVMLT FNSRGAAMFE RITQENVRKR LAIVLDGKVY SAPVIQEKIG GGRASITGKF STAEAQDLAI VLRAGSLPAP VSVLEERTVG PSLGQESIDK GILAAVVGGA AVMIFMVVYY GVSGLIADVM LCFTVLLILA GMAAFGATLT LPGLAGIVLT LGMAVDANVL IYERIREELR KGHTVLSAIH EGFDRATLAI TDSNLTTIIA SAILYQFGTG PVRGFAVTLS LGIIASMFTA IFVSRVVFQA WKGGSGDKRL SI
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