Gene DvMF_0541 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0541 
SymbolsecD 
ID7172428 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp636283 
End bp637881 
Gene Length1599 bp 
Protein Length532 aa 
Translation table11 
GC content66% 
IMG OID643539041 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002434966 
Protein GI218885645 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones58 
Fosmid unclonability p-value0.0137043 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGAGG GTTTCCGCTG GAGACTCGCC GTGGTGCTGG CCGTGCTGCT GTTCGGCGCG 
GCCTACGTGC TGCCGAGCCT GCCGGGCATC AAGTCTTCGC CGTTGGGCCG GTTTCTGCCC
GACAGCGCCA TCAGCCTCGG GCTTGACCTC ATGGGCGGCA TCCACCTGAC GCTCGGCGTC
GACGTGGACA AGGCCGTGGA AAACTCGCTG ACCCAGATGG GCCAGGACAT CCGCACCTCT
GCGCGCGAGA AGGACGTCTT CGTCCTGCGC CCGCGCGTGC TGCCCGGCGA CCGCATAGAG
TTCGTGCTGG CCAAGGCCGA GCAGCGCGAC GTGCTGGGCG AACTGCTGGC CAAGCAGTTC
CATCAGCTCA GCGTTGCGGC GCCGCAGACC ACCGATGACG GGCAGTTGCG CTACGTGGCC
ACCATGAAGC CGGAATATCG CAAGAACATC AGCGATATGG CGCTGGAGCA GGCCGTCAAG
ACCATCCGCA ACCGCATCGA CCAGTTCGGC GTGGCCGAAC CGGACATCCG CAAGCAGCAG
GACAACCGCA TCCAGATCCA GTTGCCCGGC CTGCACGACA CCCAGCGCGC CATCCAGATC
ATCGGCCAGA CGGCCCACCT GGAATTCCAC ATCGTGCGCG ATGACGTGGA CGCGGAAAAG
GCCGCGCGCG GCATTCTGCC GCCCGGTACC GAAGTGCGGC CCATGATCCG GCGCGGGGCC
GACGGCAGTC AGGCCGAAAC CCCCGTGGTG GTGGACAAGG AAGCCGTGCT TACCGGCGAA
TACGTGGCCG ATGCGCGCCC CGGCTTTGAC AATTTCAACC AGGCCTACGT GATGCTGACC
TTCAACAGCC GCGGCGCGGC CATGTTCGAA CGCATCACCC AGGAAAACGT GCGCAAGCGC
CTGGCCATCG TGCTGGACGG CAAGGTCTAC TCCGCGCCGG TCATCCAGGA AAAGATCGGC
GGTGGCCGCG CCAGCATCAC CGGCAAGTTC TCCACGGCAG AGGCGCAGGA CCTTGCCATC
GTGCTGCGTG CGGGTTCGCT GCCCGCGCCG GTGAGCGTGC TCGAAGAGCG CACCGTCGGC
CCCTCGCTGG GTCAGGAATC CATCGACAAG GGCATCCTTG CCGCCGTTGT CGGCGGCGCG
GCGGTGATGA TCTTCATGGT GGTGTACTAC GGCGTATCCG GCCTTATCGC CGACGTCATG
CTGTGCTTCA CAGTGCTGCT CATCCTGGCG GGCATGGCGG CCTTCGGCGC CACCCTGACC
CTGCCGGGCC TTGCGGGCAT CGTGCTGACC CTGGGCATGG CCGTGGACGC CAACGTGCTG
ATCTACGAAC GCATCCGAGA GGAACTGCGC AAGGGGCACA CGGTGCTTTC GGCCATCCAC
GAAGGCTTCG ACCGCGCCAC GCTGGCCATC ACCGACTCGA ACCTGACCAC CATCATCGCG
TCGGCCATCC TGTACCAGTT CGGCACCGGC CCGGTGCGCG GCTTTGCCGT CACGCTGTCG
CTGGGCATCA TCGCGTCCAT GTTCACCGCC ATCTTCGTCT CGCGCGTGGT CTTCCAGGCC
TGGAAGGGCG GTTCGGGCGA CAAACGCCTC AGCATATAG
 
Protein sequence
MKEGFRWRLA VVLAVLLFGA AYVLPSLPGI KSSPLGRFLP DSAISLGLDL MGGIHLTLGV 
DVDKAVENSL TQMGQDIRTS AREKDVFVLR PRVLPGDRIE FVLAKAEQRD VLGELLAKQF
HQLSVAAPQT TDDGQLRYVA TMKPEYRKNI SDMALEQAVK TIRNRIDQFG VAEPDIRKQQ
DNRIQIQLPG LHDTQRAIQI IGQTAHLEFH IVRDDVDAEK AARGILPPGT EVRPMIRRGA
DGSQAETPVV VDKEAVLTGE YVADARPGFD NFNQAYVMLT FNSRGAAMFE RITQENVRKR
LAIVLDGKVY SAPVIQEKIG GGRASITGKF STAEAQDLAI VLRAGSLPAP VSVLEERTVG
PSLGQESIDK GILAAVVGGA AVMIFMVVYY GVSGLIADVM LCFTVLLILA GMAAFGATLT
LPGLAGIVLT LGMAVDANVL IYERIREELR KGHTVLSAIH EGFDRATLAI TDSNLTTIIA
SAILYQFGTG PVRGFAVTLS LGIIASMFTA IFVSRVVFQA WKGGSGDKRL SI