| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | DvMF_0367 |
|---|
| Symbol | |
|---|
| ID | 7172251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011769 |
|---|
| Strand | - |
|---|
| Start bp | 431158 |
|---|
| End bp | 433014 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 643538865 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002434792 |
|---|
| Protein GI | 218885471 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 0.0353572 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAACG CCACAAAAAC CGACCAGCCC ACCCAGGGCC AGAGCATTCA CCTGATCAAG
CGTTGCTTGA AGTATTTCCG CCCCTACAAG GGCCAAATAT TCCTTTCCAT GCTGGCCATG
GGCGTGGTGT CGCTGAGCAC CGCCGGGTCC GCATGGCTGG TCAAGCCCGC CCTGGACGAA
ATATTCATCA ACAAGGACGA GCAGGCGCTG CTGTACGTGC CGCTGCTGTT CTTCGTGCTT
ACGCTGGTGA AGGGCGCCGG GCGTTACGTG CAGAACTACT TCATGCAGTA CAGCGGCCTG
CGCGTGTTGG AAAAGCTGCG CTCGGAACTG TACGACAAGA TCATCTACCT GCCGCTGCAA
TTCTACGAGG AATCGCAGGT GGGCATGCTC ATGTCGCGCA TCATCAACGA TGTGACCATG
ATCCGCAACA GCCTGCCGTC CATCGTGATG ATGGTGCGGC AACTGCTGAC CATGCTGGGC
CTGGTGGGTG TGGTGTTCTA CCAGAACCCG CGCCTGGCGG TGTGGGCGGT GCTGGTGCTG
CCCGCGGCGC TGTATCCGCT GGTATGGTTC GGTCGCAAGC TGCGCAAGTA TGGCCGCCGC
AACCAGTCGA AACTGGCGGA CATTTCCGTG GTGTTGCAGG AAGTGTTCAG CGGCATCCGG
GTGGTCAAGG CCTTTGCCAC CGAACGGCAC GAGGCGCGCC GCTTCGACGA CGAAAACGAA
CGCCTGGCCC GGCTGTACCT GAAGCAGGCC AGCGTGTCCG AGCTTTCCTC GCCGATCATG
GAACTGATCG GGGCCGTGGG CATCGGCCTG GTGATCTGGT TCGGCGGGCA CGAGGTCATC
GCCGGTGAAA CCACGGCGGG CACCTTCTTC TCGTTCGTGG CCGCGCTGGC CATGATGTAC
GACCCGGTCA AGTCGCTGAA TTCCTACAAC ATGGAAGTGC AGCGCGCCCT GGCCGGTGCC
GAGCGGGTGT TCGAGATACT CGACGCGCCC GAACTGACGG TGGAGCAGGG GGGCGACACC
CCCTTCGACG AACCCTTCCG CGAACTGCGC TTCGATGGCG TGACCTTCAC CTACGGCAGC
AAGACCGCGC CCGCGCTGGA CAACGTCAGC CTTACCGTGC GCGCGGGTGA ACGCGTGGCC
ATCGTGGGGC CCAGCGGCGC GGGCAAGAGC ACCTTCGTCA ACCTGATCCC CCGGTTCTAC
GAACCGCAGC AGGGGGCCAT CATCCTCAAT GGCCGCCCGG TGTCGGACTA CACCCTGGAA
ACCTTGCGCC GCAACGTGTC CATGGTGTCG CAGGACACCT TCCTGTTCAA CCTTCCGGTG
CGCGACAACA TCACCTACGG CCTTTCCGGG GCCATTGACG AAGACACCGT GCGCGCCGCC
GCCATGTCCG CCTATGCCGA TGAATTCATC CGCGAACTGC CGGAAGGGTA CGACACCCTG
CTGGGCGAGC GCGGGGTGAA GCTGTCCGGC GGGCAGAAGC AGCGCCTGAC CATTGCCCGG
GCCATCATGA AGGATGCGCC GCTGCTCATC CTGGACGAGG CCACCAGCGC GCTGGATTCC
GAGGCCGAGC GCATCGTGCA GAAGGCGCTG GACAACCTGA TGGAAAACCG CACCAGCATC
GTCATTGCCC ACCGGCTGTC CACCATTCTT TCCGCCGACC GCATTCTGGT CATGGAGCAG
GGGCGCATCG TGGACGCCGG GCGGCACGAG GAACTGCTGG CTCGCTGCCC CATGTACGCC
CGGCTGTACG CCATGCAGTT CGCAACCGAT GCTGCCAATG CCGTCCCGGC CAGCGTGGGC
GACCCCGTCG ACATGGAGCA GGGCGCTGCC GTGCCCGCCA CCGGAGCCAC CGCGTGA
|
|---|
| Protein sequence | MANATKTDQP TQGQSIHLIK RCLKYFRPYK GQIFLSMLAM GVVSLSTAGS AWLVKPALDE
IFINKDEQAL LYVPLLFFVL TLVKGAGRYV QNYFMQYSGL RVLEKLRSEL YDKIIYLPLQ
FYEESQVGML MSRIINDVTM IRNSLPSIVM MVRQLLTMLG LVGVVFYQNP RLAVWAVLVL
PAALYPLVWF GRKLRKYGRR NQSKLADISV VLQEVFSGIR VVKAFATERH EARRFDDENE
RLARLYLKQA SVSELSSPIM ELIGAVGIGL VIWFGGHEVI AGETTAGTFF SFVAALAMMY
DPVKSLNSYN MEVQRALAGA ERVFEILDAP ELTVEQGGDT PFDEPFRELR FDGVTFTYGS
KTAPALDNVS LTVRAGERVA IVGPSGAGKS TFVNLIPRFY EPQQGAIILN GRPVSDYTLE
TLRRNVSMVS QDTFLFNLPV RDNITYGLSG AIDEDTVRAA AMSAYADEFI RELPEGYDTL
LGERGVKLSG GQKQRLTIAR AIMKDAPLLI LDEATSALDS EAERIVQKAL DNLMENRTSI
VIAHRLSTIL SADRILVMEQ GRIVDAGRHE ELLARCPMYA RLYAMQFATD AANAVPASVG
DPVDMEQGAA VPATGATA
|
|---|
| |