Gene DvMF_0080 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0080 
SymbolrplD 
ID7171954 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp101945 
End bp102565 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content64% 
IMG OID643538573 
Product50S ribosomal protein L4 
Protein accessionYP_002434509 
Protein GI218885188 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones70 
Fosmid unclonability p-value0.186923 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGTGG TGAAAGTATA CGATCAGAAC AAGAAGGAAG CCGGCGAACT GACGCTCGCT 
CCCGAGGTGT TCGAGGTCGA GGTGAAGCCT GAGATTCTCA ATCTCGTGGT CCGTGCGCAC
CGCGCCGGGC TGCGCTCCGG CACCCATGCC ACCAAGACCC GCGCCTTCGT CTCCGGCGGC
GGTGCAAAGC CCTGGCGCCA GAAAGGCACC GGCCGCGCCC GTTCCGGTTC GAACCGCTCG
CCCATCTGGC GAGGCGGGGC CGTCATTTTC GGCCCCCAGC CCCGCGAGTA CGGCTTCAAG
GTGAACAAGA AGGTCCGTCA GCTGGCCCTG AAAATGGCGC TCAGCTCGCG GCTTGCCGGC
GAGAACCTGA TGGTGGTCAA GGGCATCGAA CTGCCCGAGA TCAAGACCAA GCTGTTCGCC
AAGGTGGCCG GTGCCCTGGG CCTCGAAAAG GCCCTGGTCA TTACCGCCGA AGCGGATACC
ACCCTCGCCC TTTCGGCCCG CAACATTCCC GGCATTACCC TGATCACCGC CGACCAGCTC
AGCGTCTACG AGATTCTGAA GCACCCGAAG CTGGTGATGT TCGAGGGCGC CGTCGAATCC
GTCCAGGCCA GGCTGAAGTA G
 
Protein sequence
MAVVKVYDQN KKEAGELTLA PEVFEVEVKP EILNLVVRAH RAGLRSGTHA TKTRAFVSGG 
GAKPWRQKGT GRARSGSNRS PIWRGGAVIF GPQPREYGFK VNKKVRQLAL KMALSSRLAG
ENLMVVKGIE LPEIKTKLFA KVAGALGLEK ALVITAEADT TLALSARNIP GITLITADQL
SVYEILKHPK LVMFEGAVES VQARLK