Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | DvMF_0034 |
Symbol | |
ID | 7171906 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Desulfovibrio vulgaris str. 'Miyazaki F' |
Kingdom | Bacteria |
Replicon accession | NC_011769 |
Strand | + |
Start bp | 43413 |
End bp | 45029 |
Gene Length | 1617 bp |
Protein Length | 538 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 643538525 |
Product | RND efflux system, outer membrane lipoprotein, NodT family |
Protein accession | YP_002434463 |
Protein GI | 218885142 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 75 |
Fosmid unclonability p-value | 0.677331 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGCTGC CTGCCCGCAC TCTCGCACTG GGGACACAGG CCCCCGCCGT GCCCGCTGCT TCCCGTTGTC TGCCGCTTCT GCTGCTCCTG CTGTTCATGC TTTCCGCATG CGCCAAGGTG GGGCCTGATT TCAGCGCGCC GGACACCGCC ATGCCGACCG GATGGCAGGA TGCCGCCGTG TTGGGCGCCA CCGCCACCCG CGAGGTGAGC GAGGAGTGGT GGCGTACCTT CGACGACGCC ACCCTGAACG GGCTGCTGGC CGAGGCGCGC GGCGGCAATC TTTCGTTGCA GGTGACCGCC CTGCGGGTGC TGGAAGCCCG CGCCCGCCTT GGCGTTGCCG TGGGCAACCT GTACCCGCAA CGGCAGCAGG CCACCGGTGG CCTGACCTGG ACCCATCCCA GCGACCGCAC GCCCACCGCC CCCCAGCCCG GCACGGGCCG GGGCAACCCC GACTACGTGC AGACCAGCGT TGGCCTGGAC GCCGCGTGGG AACTGGACTT CTGGGGCAAG TACCGGCGCG GCGTGGAAGC CGCAGACGCC GACCTGCGCG CCGCCGCGGC CGACTACGAG GCGGCCATGG TGGCGGTAAC GGCGAATGTG GCGCAGTCGT ACGTGCTGTA CCGCACCCTG CAACAGCAAC TGGCCATTGC CGACAACAAC GTGGCCATCC AGCGCGAAAG CCTGCGCATC GCCACGGCGC GCTTCAACTA CGGGGCCACC AGCGAGCGCG ACATGCGCCA GGCCCTTTCC CTGCTGCGCG ATACGGAAGC CAGCATCCCC AGCCTGGCCC ATTCCCTGCG CGAGGCCCGC AACGCACTGT GCGTGCTGCT GGGCAAGCCG CCGCAGGACC TCGCCGCCAT GCTCGGCACG GCCCCCATTC CCACGGCTCC GGCCGGTCTG GCCCTGGGCA TTCCCGCAGA CCTGCTGCGC CGCCGCCCCG ACGTGCGCAA GGCCGAATAC GCCGCCGCCG GGCAGTGTGC CCGGCTGGGC GTGGCCAAGG CCGACTTCTA CCCGTCCATC TCGCTGGGCG GCTTCGTGGG GTTCACCGCC AGCAACGTGG GGGCCTTCAG CACGGGCGAC ACCTTCTCGC ACGGGTTCAC GGCCTACGGC GGCCCCGGCC TGACCCTGCC GCTGTTCAAC TACGGGCGCA TCGCGAACAA CGTGCGGGCG CAGGACGCCC GGTTCCAGCA GGCCCTGACG GCCTACCGCG AAACGGTGCT GTCCGCCCTG CGCGAAACGG AGGACGGCAT CGACCGCTAC CTCAACGCGC AGGGCAGGGC GGCCCTGCTG ACCGAAAGCG CCGCCGACGC CGCCCGGTCG CTGGAACTGG CCATGGTCCA GTACCAGGAA GGCTCCACCG ACTTCACCAC CGTGCTCACC GCCGCGCGCG ACCTTTCCAC GCGCCAGGAT GCGCTGGCCC AGGCCAGCGG CGAGATCAGC CAGAGCCTCG TGGCCGTGTT CAAGGCGCTG GGGGGCGGCT GGCGCACCTT GCCCGAAAAC GGGCCCATTC CGCTCGAAAC GCAGCGCGAG ATGCGTGCGC GCACCGACTG GGGCGCGCTG CCCGAAGAGC ACGGCGCCGT GCCGGCCGGT GGCGACGTGC GCCCCCCCGA CATCTAG
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Protein sequence | MTLPARTLAL GTQAPAVPAA SRCLPLLLLL LFMLSACAKV GPDFSAPDTA MPTGWQDAAV LGATATREVS EEWWRTFDDA TLNGLLAEAR GGNLSLQVTA LRVLEARARL GVAVGNLYPQ RQQATGGLTW THPSDRTPTA PQPGTGRGNP DYVQTSVGLD AAWELDFWGK YRRGVEAADA DLRAAAADYE AAMVAVTANV AQSYVLYRTL QQQLAIADNN VAIQRESLRI ATARFNYGAT SERDMRQALS LLRDTEASIP SLAHSLREAR NALCVLLGKP PQDLAAMLGT APIPTAPAGL ALGIPADLLR RRPDVRKAEY AAAGQCARLG VAKADFYPSI SLGGFVGFTA SNVGAFSTGD TFSHGFTAYG GPGLTLPLFN YGRIANNVRA QDARFQQALT AYRETVLSAL RETEDGIDRY LNAQGRAALL TESAADAARS LELAMVQYQE GSTDFTTVLT AARDLSTRQD ALAQASGEIS QSLVAVFKAL GGGWRTLPEN GPIPLETQRE MRARTDWGAL PEEHGAVPAG GDVRPPDI
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