Gene DvMF_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDvMF_0034 
Symbol 
ID7171906 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDesulfovibrio vulgaris str. 'Miyazaki F' 
KingdomBacteria 
Replicon accessionNC_011769 
Strand
Start bp43413 
End bp45029 
Gene Length1617 bp 
Protein Length538 aa 
Translation table11 
GC content71% 
IMG OID643538525 
ProductRND efflux system, outer membrane lipoprotein, NodT family 
Protein accessionYP_002434463 
Protein GI218885142 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones75 
Fosmid unclonability p-value0.677331 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCTGC CTGCCCGCAC TCTCGCACTG GGGACACAGG CCCCCGCCGT GCCCGCTGCT 
TCCCGTTGTC TGCCGCTTCT GCTGCTCCTG CTGTTCATGC TTTCCGCATG CGCCAAGGTG
GGGCCTGATT TCAGCGCGCC GGACACCGCC ATGCCGACCG GATGGCAGGA TGCCGCCGTG
TTGGGCGCCA CCGCCACCCG CGAGGTGAGC GAGGAGTGGT GGCGTACCTT CGACGACGCC
ACCCTGAACG GGCTGCTGGC CGAGGCGCGC GGCGGCAATC TTTCGTTGCA GGTGACCGCC
CTGCGGGTGC TGGAAGCCCG CGCCCGCCTT GGCGTTGCCG TGGGCAACCT GTACCCGCAA
CGGCAGCAGG CCACCGGTGG CCTGACCTGG ACCCATCCCA GCGACCGCAC GCCCACCGCC
CCCCAGCCCG GCACGGGCCG GGGCAACCCC GACTACGTGC AGACCAGCGT TGGCCTGGAC
GCCGCGTGGG AACTGGACTT CTGGGGCAAG TACCGGCGCG GCGTGGAAGC CGCAGACGCC
GACCTGCGCG CCGCCGCGGC CGACTACGAG GCGGCCATGG TGGCGGTAAC GGCGAATGTG
GCGCAGTCGT ACGTGCTGTA CCGCACCCTG CAACAGCAAC TGGCCATTGC CGACAACAAC
GTGGCCATCC AGCGCGAAAG CCTGCGCATC GCCACGGCGC GCTTCAACTA CGGGGCCACC
AGCGAGCGCG ACATGCGCCA GGCCCTTTCC CTGCTGCGCG ATACGGAAGC CAGCATCCCC
AGCCTGGCCC ATTCCCTGCG CGAGGCCCGC AACGCACTGT GCGTGCTGCT GGGCAAGCCG
CCGCAGGACC TCGCCGCCAT GCTCGGCACG GCCCCCATTC CCACGGCTCC GGCCGGTCTG
GCCCTGGGCA TTCCCGCAGA CCTGCTGCGC CGCCGCCCCG ACGTGCGCAA GGCCGAATAC
GCCGCCGCCG GGCAGTGTGC CCGGCTGGGC GTGGCCAAGG CCGACTTCTA CCCGTCCATC
TCGCTGGGCG GCTTCGTGGG GTTCACCGCC AGCAACGTGG GGGCCTTCAG CACGGGCGAC
ACCTTCTCGC ACGGGTTCAC GGCCTACGGC GGCCCCGGCC TGACCCTGCC GCTGTTCAAC
TACGGGCGCA TCGCGAACAA CGTGCGGGCG CAGGACGCCC GGTTCCAGCA GGCCCTGACG
GCCTACCGCG AAACGGTGCT GTCCGCCCTG CGCGAAACGG AGGACGGCAT CGACCGCTAC
CTCAACGCGC AGGGCAGGGC GGCCCTGCTG ACCGAAAGCG CCGCCGACGC CGCCCGGTCG
CTGGAACTGG CCATGGTCCA GTACCAGGAA GGCTCCACCG ACTTCACCAC CGTGCTCACC
GCCGCGCGCG ACCTTTCCAC GCGCCAGGAT GCGCTGGCCC AGGCCAGCGG CGAGATCAGC
CAGAGCCTCG TGGCCGTGTT CAAGGCGCTG GGGGGCGGCT GGCGCACCTT GCCCGAAAAC
GGGCCCATTC CGCTCGAAAC GCAGCGCGAG ATGCGTGCGC GCACCGACTG GGGCGCGCTG
CCCGAAGAGC ACGGCGCCGT GCCGGCCGGT GGCGACGTGC GCCCCCCCGA CATCTAG
 
Protein sequence
MTLPARTLAL GTQAPAVPAA SRCLPLLLLL LFMLSACAKV GPDFSAPDTA MPTGWQDAAV 
LGATATREVS EEWWRTFDDA TLNGLLAEAR GGNLSLQVTA LRVLEARARL GVAVGNLYPQ
RQQATGGLTW THPSDRTPTA PQPGTGRGNP DYVQTSVGLD AAWELDFWGK YRRGVEAADA
DLRAAAADYE AAMVAVTANV AQSYVLYRTL QQQLAIADNN VAIQRESLRI ATARFNYGAT
SERDMRQALS LLRDTEASIP SLAHSLREAR NALCVLLGKP PQDLAAMLGT APIPTAPAGL
ALGIPADLLR RRPDVRKAEY AAAGQCARLG VAKADFYPSI SLGGFVGFTA SNVGAFSTGD
TFSHGFTAYG GPGLTLPLFN YGRIANNVRA QDARFQQALT AYRETVLSAL RETEDGIDRY
LNAQGRAALL TESAADAARS LELAMVQYQE GSTDFTTVLT AARDLSTRQD ALAQASGEIS
QSLVAVFKAL GGGWRTLPEN GPIPLETQRE MRARTDWGAL PEEHGAVPAG GDVRPPDI