Gene AFE_2854 details

Gene Information

• Locus tag: AFE_2854
• Symbol: rimM
• ID: 7137081
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Acidithiobacillus ferrooxidans ATCC 23270
• Kingdom: Bacteria
• Replicon accession: NC_011761
• Strand: -
• Start bp: 2539500
• End bp: 2540015
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643531207
• Product: 16S rRNA processing protein RimM
• Protein accession: YP_002427224
• Protein GI: 218665436
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.77473
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTTGCCAG CGTCTGAAGC CGGGGAGTGG GTGGTGCTGG GACGTGTCTC CGGCATCTAC 
GGTGTGCGCG GCATGGTGAA AGTCTTTTCT TTCACTGAGT CGCGTGACAG TATCCTCGAC 
TACTCGCCCT GGTACCTCGG GCCCGACCGG CGCCCCTGGG TGCTGGAAGA TGGACGTATG 
CAGGGCGAGG GTGTGGTGGC CAAGCTGGCG CAGGTAGAGG ACCGTGAGCA GGCGCGCGCC 
CTTATCGGGC AGGAGATCGC CGTGATCCGG GCTGATTTGC CTGAGTTGGG TGCCGGTGAG 
TTTTACTGGA GTACGCTGAC CGGGCTTCGG GTGCTGAACC GGGAAGGCAT CGTTCTGGGC 
ACCGTGTCCG CTTTTCTGGA GACCGGCGCG AATGACGTGA TGGTGATCGA CGATGGCAAG 
GGTGGTGAAC TGCTCATTCC GTGGTCGGCC GAAGCCTCTG CGGGCGTGGA TTTGCCTGCC 
GGGCAGATTG TCGTGGACTG GCAAGCCGAC TGGTGA 

 

Protein sequence

MLPASEAGEW VVLGRVSGIY GVRGMVKVFS FTESRDSILD YSPWYLGPDR RPWVLEDGRM 
QGEGVVAKLA QVEDREQARA LIGQEIAVIR ADLPELGAGE FYWSTLTGLR VLNREGIVLG 
TVSAFLETGA NDVMVIDDGK GGELLIPWSA EASAGVDLPA GQIVVDWQAD W